Factsheet for TraesCS6A01G210100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G219000.2
TraesCS6A01G349500.1
TraesCS6B01G248500.1
TraesCS6B01G382600.1
TraesCS6D01G202100.1
TraesCS6D01G332000.1
TraesCS7A01G152800.1
TraesCS7B01G056600.2
TraesCSU01G104300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	TraesCS6A01G219000.2	AT4G31580.1	10593939
AT4G24740.1	TraesCS6A01G349500.1	AT4G31580.1	10593939
AT4G24740.1	TraesCS6B01G248500.1	AT4G31580.1	10593939
AT4G24740.1	TraesCS6B01G382600.1	AT4G31580.1	10593939
AT4G24740.1	TraesCS6D01G202100.1	AT4G31580.1	10593939
AT4G24740.1	TraesCS6D01G332000.1	AT4G31580.1	10593939
AT4G24740.1	TraesCS7A01G152800.1	AT4G31580.1	10593939
AT4G24740.1	TraesCS7B01G056600.2	AT4G31580.1	10593939
AT4G24740.1	TraesCSU01G104300.1	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G238900.1	Wheat	cytosol	99.07	99.07
TraesCS6D01G193300.1	Wheat	cytosol	98.84	98.84
Os12t0460800-03	Rice	cytosol	39.53	90.43
HORVU6Hr1G053760.52	Barley	cytosol	91.63	90.37
GSMUA_Achr8P28600_001	Banana	cytosol	41.4	82.41
KXG30551	Sorghum	cytosol	85.35	82.29
Zm00001d017096_P005	Maize	cytosol	84.42	81.57
Zm00001d050970_P003	Maize	cytosol	83.72	80.72
VIT_17s0000g09500.t01	Wine grape	nucleus	76.05	75.17
KRH63654	Soybean	nucleus	72.56	73.41
KRH54290	Soybean	cytosol, nucleus	72.33	73.18
PGSC0003DMT400046853	Potato	cytosol	73.02	72.69
KRH57157	Soybean	cytosol	72.56	72.56
Solyc03g112050.2.1	Tomato	cytosol	64.42	71.39
KXG37288	Sorghum	cytosol	63.26	71.02
AT4G24740.1	Thale cress	nucleus	70.23	70.73
VIT_01s0137g00580.t01	Wine grape	nucleus	70.93	70.6
GSMUA_Achr3P17160_001	Banana	cytosol	71.4	68.37
PGSC0003DMT400030615	Potato	nucleus	67.67	67.83
Solyc05g013770.2.1	Tomato	nucleus	67.91	67.75
TraesCS5A01G369500.2	Wheat	cytosol	66.74	67.69
TraesCS6A01G241200.1	Wheat	cytosol	67.67	67.05
KRH03872	Soybean	nucleus	73.02	66.53
TraesCS3A01G212200.2	Wheat	cytosol	57.67	63.92
CDY34307	Canola	plastid	70.47	41.68
CDY03422	Canola	plastid	70.23	41.54
Bra013829.1-P	Field mustard	nucleus	67.67	40.64
TraesCS5A01G352900.1	Wheat	cytosol	26.05	26.29
TraesCS5A01G387100.1	Wheat	nucleus	25.12	19.22
TraesCS4A01G269100.1	Wheat	nucleus	26.74	18.25
TraesCS1A01G292100.1	Wheat	cytosol	27.91	16.9
TraesCS3A01G351500.1	Wheat	nucleus	27.44	16.39
TraesCS2A01G244200.2	Wheat	nucleus	26.05	16.14
TraesCS5A01G000100.1	Wheat	nucleus	27.67	12.5
TraesCS6A01G270800.6	Wheat	nucleus, plastid	26.05	11.91
TraesCS2A01G436800.1	Wheat	nucleus	25.58	11.87
TraesCS4A01G263100.1	Wheat	nucleus	29.07	11.31
CDY03423	Canola	cytosol, peroxisome, plastid	1.4	1.92
Bra013830.1-P	Field mustard	plastid	0.47	0.68

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF99
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:TraesCS6A01G210100	EnsemblPlants:TraesCS6A01G210100.1
TIGR:cd14134	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:381031633..381034626

Molecular Weight (calculated)

49359.9 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.366

Length

430 amino acids

Sequence
(BLAST)

001: MECLAEMPHA PLDRRPRKRQ RLGWDVGPEI PQLKKLCGEE VANVISAMTM GLSSGGIVSS QETQGLFRFV TPPLREDDKD GHYVFAVGDN LTSRYRINAK
101: MGEGTFGQVL ECWDRERKEM VAIKIIRGIK KYRDAAMIEI GMLEQLCKYE KSRSSCVQIR NWFDYRNHIC IVCEKLGPSL YDFLRKNSYR SFPVAIVREV
201: AKQLLECLAF MHDLRLIHTD LKPENILLVS PEYIKVPDYK VSSCSPKEGS YYKRVPKSSS IKVIDFGSTT YDQQDQTYVV STRHYRAPEV ILGLGWSYPC
301: DIWSVGCILV ELCTGEALFQ THENLEHLAM MERVLGPLPY HMLKKADRHG EKYVRKGRLN WPEGCASRES MKAVMKLPRL QNLVMQNVEH SAGDFINLLQ
401: GLLSYDPASR LTAQEALEHP FLTELSERRR

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.