Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G349500.1 | Wheat | nucleus | 99.48 | 99.48 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 96.91 | 96.91 |
| EES07659 | Sorghum | nucleus | 74.23 | 88.34 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 75.77 | 80.77 |
| Os02t0789400-01 | Rice | nucleus | 76.8 | 80.54 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 74.23 | 78.69 |
| HORVU6Hr1G083840.4 | Barley | plastid | 99.48 | 78.46 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 72.16 | 77.78 |
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 67.53 | 72.38 |
| PGSC0003DMT400067677 | Potato | nucleus | 68.04 | 72.13 |
| KRH16160 | Soybean | endoplasmic reticulum | 64.95 | 70.79 |
| PGSC0003DMT400075974 | Potato | nucleus | 66.49 | 70.49 |
| KRH04931 | Soybean | nucleus | 64.43 | 70.22 |
| CDY13444 | Canola | nucleus | 68.56 | 66.83 |
| CDX72313 | Canola | nucleus | 67.53 | 66.5 |
| Bra023994.1-P | Field mustard | nucleus | 68.04 | 66.33 |
| Zm00001d052062_P002 | Maize | extracellular | 60.82 | 66.29 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 51.03 | 65.13 |
| AT4G31580.1 | Thale cress | nucleus | 67.01 | 65.0 |
| AT2G24590.1 | Thale cress | nucleus | 65.46 | 64.8 |
| Zm00001d045330_P001 | Maize | nucleus | 49.48 | 63.16 |
| CDY45585 | Canola | nucleus | 62.89 | 62.24 |
| CDY20328 | Canola | nucleus | 62.89 | 62.24 |
| Bra032082.1-P | Field mustard | nucleus | 63.4 | 60.59 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 74.23 | 57.83 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 65.46 | 54.74 |
| Solyc08g069120.2.1 | Tomato | nucleus | 66.49 | 53.09 |
| Zm00001d028789_P001 | Maize | cytosol | 54.12 | 47.3 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 9.28 | 46.15 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS6B01G382600 |
| EnsemblPlants:TraesCS6B01G382600.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | TIGR:cd12373 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:657651510..657653352
Molecular Weight (calculated)
21523.0 Da
IEP (calculated)
11.718
GRAVY (calculated)
-1.237
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MARLYVGNLD ARVTAGELED EFRVFGVLRS VWVARKPPGF AFIDFDDKRD AEDALRDLDG KNGWRVELSR NDRGDRGGRG GGGGGGGGGR DRGGSDMKCY
101: ECGESGHFAR ECRLRIGSGG LGSGRRRSRS RSRSRSPRYR RSPSYGRRSY SPRDRSPRRR SASPAPARGR SYSKSPVRAR DDSPDAKGYR RSRS
101: ECGESGHFAR ECRLRIGSGG LGSGRRRSRS RSRSRSPRYR RSPSYGRRSY SPRDRSPRRR SASPAPARGR SYSKSPVRAR DDSPDAKGYR RSRS
001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
Arabidopsis Description
RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.