Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G31580.1 | Thale cress | nucleus | 86.73 | 85.0 |
| CDY20328 | Canola | nucleus | 82.65 | 82.65 |
| CDY45585 | Canola | nucleus | 82.65 | 82.65 |
| Bra032082.1-P | Field mustard | nucleus | 81.63 | 78.82 |
| KRH04931 | Soybean | nucleus | 70.92 | 78.09 |
| KRH16160 | Soybean | endoplasmic reticulum | 70.92 | 78.09 |
| PGSC0003DMT400067677 | Potato | nucleus | 72.45 | 77.6 |
| PGSC0003DMT400075974 | Potato | nucleus | 71.43 | 76.5 |
| EES07659 | Sorghum | nucleus | 58.67 | 70.55 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 61.22 | 66.67 |
| Os06t0187900-02 | Rice | nucleus | 62.76 | 66.49 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 61.73 | 66.48 |
| EER87987 | Sorghum | nucleus | 62.76 | 66.13 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 61.73 | 66.12 |
| TraesCSU01G104300.1 | Wheat | nucleus | 61.22 | 65.93 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 61.22 | 65.93 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 64.8 | 65.46 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 64.8 | 65.46 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 64.29 | 64.95 |
| Os02t0789400-01 | Rice | nucleus | 61.22 | 64.86 |
| AT1G23860.1 | Thale cress | nucleus | 59.18 | 62.03 |
| Solyc08g069120.2.1 | Tomato | nucleus | 71.43 | 57.61 |
| Os02t0610600-01 | Rice | nucleus | 58.16 | 57.0 |
| Zm00001d052062_P002 | Maize | extracellular | 47.45 | 52.25 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 40.31 | 51.97 |
| Zm00001d045330_P001 | Maize | nucleus | 40.31 | 51.97 |
| HORVU6Hr1G083840.4 | Barley | plastid | 64.8 | 51.63 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 9.69 | 48.72 |
| Zm00001d045076_P001 | Maize | nucleus | 51.02 | 47.85 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 60.71 | 47.79 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 60.2 | 47.77 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 61.22 | 44.61 |
| Zm00001d017177_P007 | Maize | nucleus | 57.14 | 44.27 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 51.53 | 43.53 |
| Zm00001d051052_P001 | Maize | nucleus | 59.18 | 41.88 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 60.71 | 41.32 |
| Zm00001d028789_P001 | Maize | cytosol | 44.9 | 39.64 |
| OQU85289 | Sorghum | plastid | 59.18 | 36.59 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EntrezGene:816995 | UniProt:A0A178VTR9 | ProteinID:AAD23894.1 |
| ProteinID:AEC07595.1 | EMBL:AK117883 | ArrayExpress:AT2G24590 | EnsemblPlantsGene:AT2G24590 | RefSeq:AT2G24590 | TAIR:AT2G24590 |
| RefSeq:AT2G24590-TAIR-G | EnsemblPlants:AT2G24590.1 | TAIR:AT2G24590.1 | Unigene:At.39134 | EMBL:BT005216 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | RefSeq:NP_180035.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAP08463.1 | PFAM:PF00076 | PFAM:PF00098 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 |
| PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | UniProt:Q9SJA6 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| Symbol:RSZ22a | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000000C588 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
Coordinates
chr2:+:10449631..10451184
Molecular Weight (calculated)
21916.4 Da
IEP (calculated)
11.837
GRAVY (calculated)
-1.418
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.