CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91800
EER94870
EER95096
EES00292
EES00987
EES14515
EES14795
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG30551
KXG32406
KXG35096
KXG37288
OQU77498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	EER94870	AT1G09140.1	21798944
AT2G24590.1	KXG21829	AT1G09140.1	21798944
AT2G24590.1	KXG32406	AT1G09140.1	21798944
AT2G24590.1	EES14795	AT3G21215.1	21798944
AT2G24590.1	EES00987	AT4G32660.1	21798944
AT2G24590.1	EES14515	AT5G54580.1	21798944
AT4G31580.1	EES00292	AT2G37340.1	18674533
AT4G31580.1	EES18924	AT2G37340.1	18674533
AT4G31580.1	KXG21152	AT2G37340.1	18674533
AT4G31580.1	KXG21387	AT2G37340.1	18674533
AT4G31580.1	KXG21391	AT2G37340.1	18674533
AT4G31580.1	OQU77498	AT2G37340.1	18674533
AT4G31580.1	EER91800	AT3G50670.1	10593939
AT4G31580.1	EER95096	AT3G50670.1	10593939
AT4G31580.1	EER91800	AT3G50670.1	9761791
AT4G31580.1	EER95096	AT3G50670.1	9761791
AT4G31580.1	KXG30551	AT4G24740.1	10593939
AT4G31580.1	KXG35096	AT4G24740.1	10593939
AT4G31580.1	KXG37288	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87987	Sorghum	nucleus	92.64	81.18
Os02t0789400-01	Rice	nucleus	89.57	78.92
GSMUA_Achr8P24800_001	Banana	nucleus	85.89	76.92
GSMUA_Achr4P09230_001	Banana	nucleus	84.66	76.67
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	69.33	74.34
TraesCS6B01G382600.1	Wheat	nucleus	88.34	74.23
Zm00001d052062_P002	Maize	extracellular	80.98	74.16
TraesCS6D01G332000.1	Wheat	nucleus	87.73	73.71
TraesCS6A01G349500.1	Wheat	nucleus	87.73	73.71
Zm00001d045330_P001	Maize	nucleus	65.64	70.39
VIT_04s0069g00800.t01	Wine grape	nucleus	74.23	66.85
PGSC0003DMT400067677	Potato	nucleus	74.85	66.67
PGSC0003DMT400075974	Potato	nucleus	72.39	64.48
KRH04931	Soybean	nucleus	69.94	64.04
KRH16160	Soybean	endoplasmic reticulum	69.94	64.04
CDX72313	Canola	nucleus	73.62	60.91
CDY13444	Canola	nucleus	73.62	60.3
AT4G31580.1	Thale cress	nucleus	73.62	60.0
Bra023994.1-P	Field mustard	nucleus	73.01	59.8
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	84.66	59.48
AT2G24590.1	Thale cress	nucleus	70.55	58.67
HORVU6Hr1G083840.4	Barley	plastid	87.73	58.13
CDY45585	Canola	nucleus	66.87	55.61
CDY20328	Canola	nucleus	66.87	55.61
Bra032082.1-P	Field mustard	nucleus	67.48	54.19
Zm00001d028789_P001	Maize	cytosol	71.78	52.7
Solyc08g069120.2.1	Tomato	nucleus	73.01	48.97
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	11.66	48.72
OQU85289	Sorghum	plastid	82.82	42.59

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:8082722	UniProt:C5XUC2	EnsemblPlants:EES07659
ProteinID:EES07659	ProteinID:EES07659.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EMBL:KC425059	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	EnsemblPlantsGene:SORBI_3004G325600	SUPFAM:SSF54928
SUPFAM:SSF57756	unigene:Sbi.5833	UniParc:UPI0001A86260	RefSeq:XP_002454683.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:66088400..66094053

Molecular Weight (calculated)

18650.7 Da

IEP (calculated)

11.754

GRAVY (calculated)

-1.198

Length

163 amino acids

Sequence
(BLAST)

001: MARVYVGNLD ARVTSGELED EFRVFGVLRS VWVARKPPGF AFIDFDDRRD AEDAIRDLDG KNGWRVELSR NSSGRGGRDR YGGSESKCYE CGETGHFARE
101: CRLRIGSGGL GSGRRRSRSR SRSRSPRYRR SPSYSRRSYS PRYRSPRRRS PSPARGRSYS RSP

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.