CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91800
EER94870
EER95096
EES00292
EES00987
EES14515
EES14795
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG30551
KXG32406
KXG35096
KXG37288
OQU77498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	EER94870	AT1G09140.1	21798944
AT2G24590.1	KXG21829	AT1G09140.1	21798944
AT2G24590.1	KXG32406	AT1G09140.1	21798944
AT2G24590.1	EES14795	AT3G21215.1	21798944
AT2G24590.1	EES00987	AT4G32660.1	21798944
AT2G24590.1	EES14515	AT5G54580.1	21798944
AT4G31580.1	EES00292	AT2G37340.1	18674533
AT4G31580.1	EES18924	AT2G37340.1	18674533
AT4G31580.1	KXG21152	AT2G37340.1	18674533
AT4G31580.1	KXG21387	AT2G37340.1	18674533
AT4G31580.1	KXG21391	AT2G37340.1	18674533
AT4G31580.1	OQU77498	AT2G37340.1	18674533
AT4G31580.1	EER91800	AT3G50670.1	10593939
AT4G31580.1	EER95096	AT3G50670.1	10593939
AT4G31580.1	EER91800	AT3G50670.1	9761791
AT4G31580.1	EER95096	AT3G50670.1	9761791
AT4G31580.1	KXG30551	AT4G24740.1	10593939
AT4G31580.1	KXG35096	AT4G24740.1	10593939
AT4G31580.1	KXG37288	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017177_P007	Maize	nucleus	73.19	91.7
EES07659	Sorghum	nucleus	42.59	82.82
GSMUA_Achr8P24800_001	Banana	nucleus	43.85	76.37
Os02t0610600-01	Rice	nucleus	47.63	75.5
GSMUA_Achr4P09230_001	Banana	nucleus	42.59	75.0
EER87987	Sorghum	nucleus	43.85	74.73
TraesCS6B01G248500.1	Wheat	nucleus	58.04	73.9
TraesCS6A01G219000.2	Wheat	nucleus	55.52	71.26
VIT_04s0069g00800.t01	Wine grape	nucleus	39.12	68.51
KRH04931	Soybean	nucleus	38.17	67.98
KRH16160	Soybean	endoplasmic reticulum	38.17	67.98
PGSC0003DMT400075974	Potato	nucleus	39.12	67.76
PGSC0003DMT400067677	Potato	nucleus	38.49	66.67
TraesCS6D01G202100.1	Wheat	nucleus	55.52	65.43
Zm00001d051052_P001	Maize	nucleus	57.1	65.34
CDX72313	Canola	nucleus	38.8	62.44
CDY13444	Canola	nucleus	37.85	60.3
Bra023994.1-P	Field mustard	nucleus	37.85	60.3
AT2G24590.1	Thale cress	nucleus	36.59	59.18
AT4G31580.1	Thale cress	nucleus	37.22	59.0
CDY45585	Canola	nucleus	35.33	57.14
CDY20328	Canola	nucleus	35.33	57.14
Bra032082.1-P	Field mustard	nucleus	35.96	56.16
Solyc08g069120.2.1	Tomato	nucleus	40.69	53.09
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	5.99	48.72

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A1Z5RP12	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU85289	ProteinID:OQU85289	ProteinID:OQU85289.1	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF23	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	EnsemblPlantsGene:SORBI_3004G211400	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000B8B990D
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:56110439..56118081

Molecular Weight (calculated)

35108.4 Da

IEP (calculated)

12.055

GRAVY (calculated)

-1.074

Length

317 amino acids

Sequence
(BLAST)

001: MALGTVNARL VNSFTPKTLP CPPPAPSLFY SGRGSNLNPR AAAQVAPATP NLKSPGARSL VKIVVLLQAE LMARVYVGNL DPRVTAREIE DEFRTFGVLR
101: SVWVARKPPG FAFIDFDDRR DAQDAIRELD GKNGWKVELS TKAGGGRGRD RNGSDMKCYE CGESGHFARE CRLRIGSGGL GSGRRRSRSP RYRSRSRSRS
201: PRYRRSPSYG RRSYSPRDRS PRRRSYSRSP PGSRARSLSR SPPLPPPPPR NNSRSPRGAR EMSRSPPPPP PRNNSRSPPG ARDVSRSPPP PPDARRSYSR
301: SPGQQPQRDE SPYANDA

Best Arabidopsis Sequence Match ( AT2G24590.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS

Arabidopsis Description

RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.