Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16160 | Soybean | endoplasmic reticulum | 90.61 | 92.13 |
| KRH04931 | Soybean | nucleus | 90.06 | 91.57 |
| PGSC0003DMT400075974 | Potato | nucleus | 91.71 | 90.71 |
| PGSC0003DMT400067677 | Potato | nucleus | 88.95 | 87.98 |
| EES07659 | Sorghum | nucleus | 66.85 | 74.23 |
| VIT_01s0026g00250.t01 | Wine grape | nucleus | 79.01 | 72.22 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 70.17 | 70.56 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 70.72 | 70.33 |
| Os06t0187900-02 | Rice | nucleus | 71.82 | 70.27 |
| Solyc08g069120.2.1 | Tomato | nucleus | 91.71 | 68.31 |
| EER87987 | Sorghum | nucleus | 70.17 | 68.28 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 68.51 | 68.13 |
| TraesCSU01G104300.1 | Wheat | nucleus | 68.51 | 68.13 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 68.51 | 67.76 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 72.38 | 67.53 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 72.38 | 67.53 |
| Os02t0789400-01 | Rice | nucleus | 68.51 | 67.03 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 71.82 | 67.01 |
| Os02t0610600-01 | Rice | nucleus | 69.06 | 62.5 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 12.15 | 56.41 |
| Zm00001d052062_P002 | Maize | extracellular | 54.14 | 55.06 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 45.86 | 54.61 |
| Zm00001d045330_P001 | Maize | nucleus | 45.3 | 53.95 |
| HORVU6Hr1G083840.4 | Barley | plastid | 72.38 | 53.25 |
| Zm00001d045076_P001 | Maize | nucleus | 59.12 | 51.2 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 68.51 | 50.2 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 69.06 | 50.2 |
| Zm00001d017177_P007 | Maize | nucleus | 66.85 | 47.83 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 60.22 | 46.98 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 67.96 | 45.72 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 69.06 | 43.4 |
| Zm00001d051052_P001 | Maize | nucleus | 65.19 | 42.6 |
| Zm00001d028789_P001 | Maize | cytosol | 51.38 | 41.89 |
| OQU85289 | Sorghum | plastid | 68.51 | 39.12 |
Protein Annotations
| EntrezGene:100262399 | wikigene:100262399 | MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | ProteinID:CBI24003 |
| ProteinID:CBI24003.3 | UniProt:D7T0J3 | EMBL:FN595500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | EntrezGene:LOC100262399 |
| wikigene:LOC100262399 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | TIGR:TC61399 | UniParc:UPI0001BE24DF | ArrayExpress:VIT_04s0069g00800 | EnsemblPlantsGene:VIT_04s0069g00800 |
| EnsemblPlants:VIT_04s0069g00800.t01 | unigene:Vvi.7839 | RefSeq:XP_002272657 | RefSeq:XP_002272657.2 | RefSeq:XP_010648841.1 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:8906560..8911960
Molecular Weight (calculated)
20641.1 Da
IEP (calculated)
11.891
GRAVY (calculated)
-1.339
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVTERELED EFRVFGVIRS VWVARRPPGY AFIDFDDRRD AQDAIRELDG KNGWRVELSH NSRGGGGGGR GGGRGRSGGS DLKCYECGEP
101: GHFARECRLR GGSGRRRSRS PRYRRSPSYG RRSYSPRGRS PRRRSLSPRG RSYSRSPGYR GREELPYANG NGLRERRRSR S
101: GHFARECRLR GGSGRRRSRS PRYRRSPSYG RRSYSPRGRS PRRRSLSPRG RSYSRSPGYR GREELPYANG NGLRERRRSR S
001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
Arabidopsis Description
RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.