Factsheet for Os02t0789400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os01t0590900-01
Os03t0285900-01
Os03t0344100-02
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os07t0673500-01
Os08t0139000-02
Os10t0115600-02
Os12t0460800-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Os01t0316600-01	AT1G09140.1	21798944
AT2G24590.1	Os03t0344100-02	AT1G09140.1	21798944
AT2G24590.1	Os05t0364600-01	AT1G09140.1	21798944
AT2G24590.1	Os07t0673500-01	AT1G09140.1	21798944
AT2G24590.1	Os01t0590900-01	AT4G32660.1	21798944
AT2G24590.1	Os08t0139000-02	AT5G54580.1	21798944
AT4G31580.1	Os01t0155600-01	AT2G37340.1	18674533
AT4G31580.1	Os03t0285900-01	AT2G37340.1	18674533
AT4G31580.1	Os05t0120100-01	AT2G37340.1	18674533
AT4G31580.1	Os05t0162600-01	AT2G37340.1	18674533
AT4G31580.1	Os10t0115600-02	AT3G50670.1	10593939
AT4G31580.1	Os10t0115600-02	AT3G50670.1	9761791
AT4G31580.1	Os12t0460800-03	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07659	Sorghum	nucleus	78.92	89.57
Os06t0187900-02	Rice	nucleus	80.0	80.0
GSMUA_Achr4P09230_001	Banana	nucleus	77.84	80.0
GSMUA_Achr8P24800_001	Banana	nucleus	77.3	78.57
TraesCS6B01G382600.1	Wheat	nucleus	80.54	76.8
TraesCS6A01G349500.1	Wheat	nucleus	80.54	76.8
TraesCS6D01G332000.1	Wheat	nucleus	80.0	76.29
VIT_04s0069g00800.t01	Wine grape	nucleus	67.03	68.51
PGSC0003DMT400067677	Potato	nucleus	67.03	67.76
Zm00001d052062_P002	Maize	extracellular	64.86	67.42
Os02t0610600-01	Rice	nucleus	71.89	66.5
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	54.05	65.79
PGSC0003DMT400075974	Potato	nucleus	64.32	65.03
KRH04931	Soybean	nucleus	62.16	64.61
KRH16160	Soybean	endoplasmic reticulum	62.16	64.61
Zm00001d045330_P001	Maize	nucleus	51.35	62.5
AT2G24590.1	Thale cress	nucleus	64.86	61.22
HORVU6Hr1G083840.4	Barley	plastid	80.54	60.57
CDX72313	Canola	nucleus	64.32	60.41
Bra023994.1-P	Field mustard	nucleus	64.86	60.3
AT4G31580.1	Thale cress	nucleus	64.86	60.0
CDY13444	Canola	nucleus	64.32	59.8
CDY20328	Canola	nucleus	62.16	58.67
CDY45585	Canola	nucleus	62.16	58.67
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	72.43	57.76
Bra032082.1-P	Field mustard	nucleus	62.7	57.14
Solyc08g069120.2.1	Tomato	nucleus	64.32	48.97
Zm00001d028789_P001	Maize	cytosol	57.84	48.2
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	9.73	46.15

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4329951	EntrezGene:4330968	EntrezGene:4340353
EMBL:AK073210	EMBL:AK073359	ProteinID:BAD19103.1	ProteinID:BAD19873.1	ProteinID:BAF10266.1	ProteinID:BAS81304.1
ProteinID:EEE57947.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008380	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001878
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os02g0789400	EnsemblPlants:Os02t0789400-01	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	UniProt:Q6K4N0	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0000375763
RefSeq:XP_015622565.1	RefSeq:XP_015622566.1	RefSeq:XP_015622567.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

RSZP21Similar to 9G8-like SR protein (RSZp22 splicing factor). (Os02t0789400-01);Similar to 9G8-like SR protein (RSZp22 splicing factor). (Os02t0789400-02)

Coordinates

chr2:-:33541862..33546534

Molecular Weight (calculated)

21024.5 Da

IEP (calculated)

11.742

GRAVY (calculated)

-1.278

Length

185 amino acids

Sequence
(BLAST)

001: MARLYVGNLD PRVTSGELED EFRVFGVLRS VWVARKPPGF AFIDFDDKRD AEDALRDLDG KNGWRVELSR NSSSRGGRDR HGGSEMKCYE CGETGHFARE
101: CRLRIGPGGL GSGKRRSRSR SRSRSPQYRK SPTYGRRSYS PRDRSPRRRS VSPVRGRSYS RSPRGRGGSP YADGRDGGRY RRSRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.