Factsheet for Zm00001d045076_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005361_P007
Zm00001d009821_P001
Zm00001d011004_P008
Zm00001d011005_P005
Zm00001d011258_P001
Zm00001d014343_P002
Zm00001d017096_P005
Zm00001d024675_P001
Zm00001d035551_P007
Zm00001d035552_P001
Zm00001d037543_P001
Zm00001d037925_P006
Zm00001d040672_P013
Zm00001d041673_P001
Zm00001d044338_P003
Zm00001d047498_P003
Zm00001d049346_P001
Zm00001d050970_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Zm00001d009821_P001	AT1G09140.1	21798944
AT2G24590.1	Zm00001d037925_P006	AT1G09140.1	21798944
AT2G24590.1	Zm00001d040672_P013	AT1G09140.1	21798944
AT2G24590.1	Zm00001d041673_P001	AT1G09140.1	21798944
AT2G24590.1	Zm00001d047498_P003	AT1G09140.1	21798944
AT2G24590.1	Zm00001d049346_P001	AT3G21215.1	21798944
AT2G24590.1	Zm00001d011258_P001	AT4G32660.1	21798944
AT2G24590.1	Zm00001d044338_P003	AT4G32660.1	21798944
AT2G24590.1	Zm00001d024675_P001	AT5G54580.1	21798944
AT4G31580.1	Zm00001d011004_P008	AT2G37340.1	18674533
AT4G31580.1	Zm00001d011005_P005	AT2G37340.1	18674533
AT4G31580.1	Zm00001d035551_P007	AT2G37340.1	18674533
AT4G31580.1	Zm00001d035552_P001	AT2G37340.1	18674533
AT4G31580.1	Zm00001d037543_P001	AT2G37340.1	18674533
AT4G31580.1	Zm00001d014343_P002	AT3G50670.1	10593939
AT4G31580.1	Zm00001d014343_P002	AT3G50670.1	9761791
AT4G31580.1	Zm00001d005361_P007	AT4G24740.1	10593939
AT4G31580.1	Zm00001d017096_P005	AT4G24740.1	10593939
AT4G31580.1	Zm00001d050970_P003	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87987	Sorghum	nucleus	66.03	74.19
Os06t0187900-02	Rice	nucleus	62.68	70.81
TraesCSU01G104300.1	Wheat	nucleus	59.33	68.13
TraesCS7A01G152800.1	Wheat	nucleus	59.33	68.13
GSMUA_Achr8P24800_001	Banana	nucleus	59.33	68.13
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	49.28	67.76
TraesCS7B01G056600.2	Wheat	nucleus	59.33	67.76
GSMUA_Achr4P09230_001	Banana	nucleus	57.89	67.22
Zm00001d045330_P001	Maize	nucleus	46.89	64.47
Zm00001d052062_P002	Maize	extracellular	51.67	60.67
VIT_04s0069g00800.t01	Wine grape	nucleus	51.2	59.12
PGSC0003DMT400067677	Potato	nucleus	51.67	59.02
PGSC0003DMT400075974	Potato	nucleus	50.24	57.38
KRH16160	Soybean	endoplasmic reticulum	47.85	56.18
KRH04931	Soybean	nucleus	47.85	56.18
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	61.24	55.17
CDX72313	Canola	nucleus	49.76	52.79
AT4G31580.1	Thale cress	nucleus	50.24	52.5
CDY13444	Canola	nucleus	49.28	51.76
Bra023994.1-P	Field mustard	nucleus	49.28	51.76
AT2G24590.1	Thale cress	nucleus	47.85	51.02
CDY45585	Canola	nucleus	45.93	48.98
CDY20328	Canola	nucleus	45.93	48.98
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	9.09	48.72
Zm00001d028789_P001	Maize	cytosol	50.72	47.75
Zm00001d017177_P007	Maize	nucleus	57.42	47.43
Bra032082.1-P	Field mustard	nucleus	45.93	47.29
Zm00001d051052_P001	Maize	nucleus	58.85	44.4
Solyc08g069120.2.1	Tomato	nucleus	49.76	42.8
HORVU7Hr1G031320.1	Barley	nucleus	58.85	42.71

Protein Annotations

EntrezGene:100282961	MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A1D6NTG8	ProteinID:AQL01489.1
ProteinID:AQL01490.1	ProteinID:AQL01491.1	ProteinID:AQL01496.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0008438B11	EnsemblPlantsGene:Zm00001d045076	EnsemblPlants:Zm00001d045076_P001
EnsemblPlants:Zm00001d045076_T001	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

Serine/arginine-rich splicing factor RSZ22

Coordinates

chr9:-:11780929..11784573

Molecular Weight (calculated)

23229.6 Da

IEP (calculated)

11.250

GRAVY (calculated)

-0.594

Length

209 amino acids

Sequence
(BLAST)

001: MARLYIGNLD PRVTARELED EFRTFGVLRS VWVARKPPGF AFIDFDDKRD AEDAIRDLDG KNGWRVELSR NASGGRGGRD RHGGSESKCY ECGETGHFAR
101: ECRLRIGSGG LGSGRRRSRS RSRSRSPRYR RSPSYGRRTM NLIEFISLQT GVTVLQHALQ GVVASHQLVD AAIAGHHSTR VHVKNLPMIM DTAAAGARAR
201: SLYPTTSVM

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.