Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95096 | Sorghum | nucleus | 83.27 | 96.69 |
| EER91800 | Sorghum | nucleus | 77.05 | 89.09 |
| Os10t0115600-02 | Rice | nucleus | 67.26 | 81.64 |
| TraesCS1D01G124800.1 | Wheat | nucleus | 64.06 | 75.16 |
| TraesCS1B01G146600.1 | Wheat | nucleus | 47.69 | 74.86 |
| TraesCS1A01G128600.1 | Wheat | nucleus | 62.99 | 73.6 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 62.1 | 70.08 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 43.59 | 68.82 |
| GSMUA_Achr10P... | Banana | nucleus | 46.62 | 67.18 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 47.33 | 64.25 |
| Bra012098.1-P | Field mustard | cytosol | 19.22 | 60.67 |
| CDY53849 | Canola | nucleus, plastid | 20.46 | 56.37 |
| Solyc02g085420.2.1 | Tomato | nucleus | 47.15 | 55.44 |
| CDX81371 | Canola | nucleus | 41.46 | 55.34 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 9.43 | 54.64 |
| PGSC0003DMT400038558 | Potato | nucleus | 46.09 | 54.53 |
| CDY57127 | Canola | plasma membrane | 40.93 | 54.5 |
| AT3G50670.1 | Thale cress | nucleus | 41.28 | 54.33 |
| KRH28659 | Soybean | nucleus | 46.09 | 53.73 |
| KRH76798 | Soybean | nucleus | 45.73 | 53.43 |
| CDY30756 | Canola | nucleus, plastid | 27.76 | 37.59 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 12.81 | 36.92 |
| Zm00001d021137_P002 | Maize | nucleus | 14.41 | 16.56 |
Protein Annotations
| MapMan:16.4.1.1.1 | UniProt:A0A1D6GSC7 | ProteinID:AQK65956.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030619 | InterPro:IPR000504 |
| PFAM:PF00076 | PFAM:PF12220 | PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | InterPro:U1snRNP70_N | UniParc:UPI0008425647 | EnsemblPlantsGene:Zm00001d014343 |
| EnsemblPlants:Zm00001d014343_P002 | EnsemblPlants:Zm00001d014343_T002 | SEG:seg | InterPro:snRNP70_RRM | : | : |
Description
U1 snRNP
Coordinates
chr5:-:41976614..41981986
Molecular Weight (calculated)
66284.7 Da
IEP (calculated)
9.632
GRAVY (calculated)
-1.609
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDYGHGGGQ MRGNPDSRPR GQGQRPNVQQ LKLMGQIHPT GLTPNLLKLF EPRPPLEYKP PLEKRKLPAY TGMAQFVSHF AEPEDPEYAP PVPKCETRAE
101: KKARIRNNKL EQGAAKVAEE LQKYDPQSDP NATGDPYKTL FVARLNYETS EQRIKREFEG YGPIKRVSNV VIPVQVKLLH FETGNSQFHS HFCIKFPGKG
201: ISNLFPNVCQ SARQRFSSNC VDLCWISLLV WKLYMCKVRL VTEKDTSKPR GYAFIEYVHT RDMKNAYKQA DGRKVDNRRV LVDVERGRTV PNWRPRRLGG
301: GLGSSRMGGT DTDKKDSTRE QQQGGRPRSE EPRRDDRRAD RDREKSRERV RERDREERTR ERSHDRTRDR DLRDEKHHHR DRERTRDRER GKDRERDHGR
401: DRERDRRDRD KDRGRDYDRE RDRGRSHDRH RERGRDRGER DYERTSHERD RGHMHERDAD YGNGGTKHDK NLSSYGQDYG YGQYEQHKGH DAYGYSQDVR
501: GHETEHSKRH EHEYYRVDSY GKMEANYQMP PNNAEPEGPE EGEAYEEGDY QYHRSGEHMK EA
101: KKARIRNNKL EQGAAKVAEE LQKYDPQSDP NATGDPYKTL FVARLNYETS EQRIKREFEG YGPIKRVSNV VIPVQVKLLH FETGNSQFHS HFCIKFPGKG
201: ISNLFPNVCQ SARQRFSSNC VDLCWISLLV WKLYMCKVRL VTEKDTSKPR GYAFIEYVHT RDMKNAYKQA DGRKVDNRRV LVDVERGRTV PNWRPRRLGG
301: GLGSSRMGGT DTDKKDSTRE QQQGGRPRSE EPRRDDRRAD RDREKSRERV RERDREERTR ERSHDRTRDR DLRDEKHHHR DRERTRDRER GKDRERDHGR
401: DRERDRRDRD KDRGRDYDRE RDRGRSHDRH RERGRDRGER DYERTSHERD RGHMHERDAD YGNGGTKHDK NLSSYGQDYG YGQYEQHKGH DAYGYSQDVR
501: GHETEHSKRH EHEYYRVDSY GKMEANYQMP PNNAEPEGPE EGEAYEEGDY QYHRSGEHMK EA
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.