Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76798 | Soybean | nucleus | 93.15 | 93.35 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 58.71 | 79.49 |
| GSMUA_Achr10P... | Banana | nucleus | 57.05 | 70.51 |
| Bra012098.1-P | Field mustard | cytosol | 24.69 | 66.85 |
| CDY53849 | Canola | nucleus, plastid | 28.22 | 66.67 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 56.43 | 65.7 |
| CDY57127 | Canola | plasma membrane | 56.22 | 64.22 |
| TraesCS1B01G146600.1 | Wheat | nucleus | 47.51 | 63.97 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 12.86 | 63.92 |
| CDX81371 | Canola | nucleus | 55.81 | 63.9 |
| AT3G50670.1 | Thale cress | nucleus | 55.81 | 63.0 |
| PGSC0003DMT400038558 | Potato | nucleus | 61.41 | 62.32 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 25.1 | 62.05 |
| Solyc02g085420.2.1 | Tomato | nucleus | 61.41 | 61.92 |
| Os10t0115600-02 | Rice | nucleus | 54.77 | 57.02 |
| TraesCS1A01G176500.1 | Wheat | nucleus | 56.64 | 56.76 |
| TraesCS1D01G162500.1 | Wheat | nucleus | 56.43 | 56.55 |
| HORVU1Hr1G046870.5 | Barley | nucleus | 56.02 | 56.13 |
| TraesCS1B01G203600.1 | Wheat | nucleus | 56.02 | 56.13 |
| TraesCS1D01G124800.1 | Wheat | nucleus | 52.9 | 53.24 |
| EER95096 | Sorghum | nucleus | 53.11 | 52.89 |
| EER91800 | Sorghum | nucleus | 53.11 | 52.67 |
| TraesCS1A01G128600.1 | Wheat | nucleus | 52.28 | 52.39 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 51.66 | 50.0 |
| Zm00001d014343_P002 | Maize | nucleus | 53.73 | 46.09 |
| CDY30756 | Canola | nucleus, plastid | 36.31 | 42.17 |
| KRH46935 | Soybean | nucleus | 19.71 | 29.05 |
| KRH01744 | Soybean | nucleus | 19.92 | 27.67 |
Protein Annotations
| EntrezGene:100814484 | MapMan:16.4.1.1.1 | Gene3D:3.30.70.330 | EMBL:ACUP02006760 | EnsemblPlantsGene:GLYMA_11G067300 | GO:GO:0000243 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005685 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030619 | GO:GO:0071004 | GO:GO:0071011 |
| UniProt:I1LHR1 | InterPro:IPR000504 | InterPro:IPR012677 | EnsemblPlants:KRH28659 | ProteinID:KRH28659 | ProteinID:KRH28659.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF12220 | PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | InterPro:U1snRNP70_N | UniParc:UPI000233D556 |
| SEG:seg | InterPro:snRNP70_RRM | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:5038254..5043697
Molecular Weight (calculated)
57630.4 Da
IEP (calculated)
8.688
GRAVY (calculated)
-1.895
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDNNSNNDA FMRNQNAAVQ ARTKAQNRSN VLQLKLIGQS HPTGLTANLL KLFEPRPPLE YKPPPEKRKC PPLSGMAQFV SKFAEPGEPE YAPPVPETET
101: PAQKRARIHK LRLEKGAAKA AEELEKYDPH NDPNVSGDPY KTLFVAKLSY ETTESRIKRE FESYGPIKRV RLVADKDINK PRGYAFIEYL HTRDMKAAYK
201: QADGRKIDGR RVLVDVERGR TVPNWRPRRL GGGLGTTRVG GEEVNQRHSG REQQQSRSEE PRVREDRHAD RDREISRERG RDKDRERERS REHSHERVRD
301: RDHREDRHHR DRDRNRDRDR DRERDRDRGR DRDRTRDRDR ERGRDRDRDR EYDRHRERDR DYEVGDPDRG RSRDRESDYD RVESKHGERN HDYEPEDDRG
401: RHNQYEHGRR HADPDHDPER YDHYNHGDDH GDHYNQYRDH DGMEDDYHAG RATSESHEKE RSHDVDREYQ RSERSHSREY DY
101: PAQKRARIHK LRLEKGAAKA AEELEKYDPH NDPNVSGDPY KTLFVAKLSY ETTESRIKRE FESYGPIKRV RLVADKDINK PRGYAFIEYL HTRDMKAAYK
201: QADGRKIDGR RVLVDVERGR TVPNWRPRRL GGGLGTTRVG GEEVNQRHSG REQQQSRSEE PRVREDRHAD RDREISRERG RDKDRERERS REHSHERVRD
301: RDHREDRHHR DRDRNRDRDR DRERDRDRGR DRDRTRDRDR ERGRDRDRDR EYDRHRERDR DYEVGDPDRG RSRDRESDYD RVESKHGERN HDYEPEDDRG
401: RHNQYEHGRR HADPDHDPER YDHYNHGDDH GDHYNQYRDH DGMEDDYHAG RATSESHEKE RSHDVDREYQ RSERSHSREY DY
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.