Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G176500.1 | Wheat | nucleus | 99.58 | 99.58 |
| TraesCS1B01G203600.1 | Wheat | nucleus | 98.96 | 98.96 |
| HORVU1Hr1G046870.5 | Barley | nucleus | 97.71 | 97.71 |
| TraesCS1D01G124800.1 | Wheat | nucleus | 69.85 | 70.15 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 51.56 | 69.66 |
| GSMUA_Achr10P... | Banana | nucleus | 54.89 | 67.69 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 56.76 | 65.94 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 11.85 | 58.76 |
| Bra012098.1-P | Field mustard | cytosol | 21.41 | 57.87 |
| CDY53849 | Canola | nucleus, plastid | 24.32 | 57.35 |
| KRH28659 | Soybean | nucleus | 56.55 | 56.43 |
| KRH76798 | Soybean | nucleus | 56.34 | 56.34 |
| CDY57127 | Canola | plasma membrane | 48.44 | 55.21 |
| Solyc02g085420.2.1 | Tomato | nucleus | 54.26 | 54.6 |
| AT3G50670.1 | Thale cress | nucleus | 48.23 | 54.33 |
| CDX81371 | Canola | nucleus | 47.4 | 54.16 |
| PGSC0003DMT400038558 | Potato | nucleus | 53.01 | 53.68 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 16.84 | 41.54 |
| CDY30756 | Canola | nucleus, plastid | 31.81 | 36.87 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 19.54 | 22.43 |
Protein Annotations
| MapMan:16.4.1.1.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0030619 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF12220 |
| PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1D01G162500 | EnsemblPlants:TraesCS1D01G162500.1 | InterPro:U1snRNP70_N | TIGR:cd12236 | SEG:seg |
| InterPro:snRNP70_RRM | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:232344259..232349263
Molecular Weight (calculated)
56656.9 Da
IEP (calculated)
9.713
GRAVY (calculated)
-1.783
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDYGNAMMR NQDAGVQSRV KAQSRANLLQ LKLIGQSHPT GLTTNLLKLF EPRPPLEHKP PLEKRKLPAY SGMSQFVSRF AEPGDPEYAP PVPTCETRAE
101: KKDRIRQLKL EEGAAKVAEE LQKYDPQNDP NVTGDPYKTL FVARLGYETS EQKVKRDFEA YGPIKRVRLI TDKVTNKPRG YAFVEYAHTR DMKSAYKQAD
201: GRKVDNKRVL VDVERGRTVP NWRPRRLGGG LGSSRIGGED AAQKHSAREQ QNAAGRPRSE EPRRDDRPAD RDREKSRDRV RERDRDEKTR ERSHDRTRDR
301: DPREDRHHHR DRERTRDRDR ERDQERDRGR DRRDRDRHKD HGRDRDQDRD RKRERSHGRG RDRDRDYERA SHEQDPGRDR DYKRARHEHD RGHLQESDAD
401: YGNGELGYNQ HEHHRSHEQY GYGLDGHERS KRHEHYRDDP HSKMATNHQG QPENAEPAVP EEGEAYEEGD YQHIQASEYR N
101: KKDRIRQLKL EEGAAKVAEE LQKYDPQNDP NVTGDPYKTL FVARLGYETS EQKVKRDFEA YGPIKRVRLI TDKVTNKPRG YAFVEYAHTR DMKSAYKQAD
201: GRKVDNKRVL VDVERGRTVP NWRPRRLGGG LGSSRIGGED AAQKHSAREQ QNAAGRPRSE EPRRDDRPAD RDREKSRDRV RERDRDEKTR ERSHDRTRDR
301: DPREDRHHHR DRERTRDRDR ERDQERDRGR DRRDRDRHKD HGRDRDQDRD RKRERSHGRG RDRDRDYERA SHEQDPGRDR DYKRARHEHD RGHLQESDAD
401: YGNGELGYNQ HEHHRSHEQY GYGLDGHERS KRHEHYRDDP HSKMATNHQG QPENAEPAVP EEGEAYEEGD YQHIQASEYR N
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.