CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14795
KXG20038
KXG26157
KXG30289
OQU88149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	KXG26157	AT2G33550.1	21798944
AT5G54580.1	KXG30289	AT2G33550.1	21798944
AT5G54580.1	OQU88149	AT2G33550.1	21798944
AT5G54580.1	EES14795	AT3G21215.1	21798944
AT5G54580.1	KXG20038	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024675_P001	Maize	mitochondrion	87.86	87.86
Os08t0139000-02	Rice	mitochondrion	81.43	80.85
TraesCS7A01G307200.1	Wheat	plastid	79.29	72.55
TraesCS7B01G207500.1	Wheat	mitochondrion	78.57	72.37
KRH25927	Soybean	mitochondrion, plastid	65.0	62.76
EER97356	Sorghum	plastid	58.57	62.6
GSMUA_Achr11P...	Banana	mitochondrion	47.86	62.04
Bra002976.1-P	Field mustard	mitochondrion	45.71	61.54
GSMUA_Achr8P07380_001	Banana	mitochondrion	59.29	61.48
KRH55574	Soybean	mitochondrion, plastid	62.14	60.0
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	46.43	56.52
CDY43035	Canola	plastid	61.43	56.21
Bra029020.1-P	Field mustard	plastid	61.43	56.21
Solyc07g063900.2.1	Tomato	plastid	59.29	54.97
CDY42466	Canola	plastid	60.0	54.9
CDY43820	Canola	plastid	60.71	54.14
AT5G54580.1	Thale cress	mitochondrion, plastid	60.0	53.85
CDY64931	Canola	plastid	58.57	53.59
PGSC0003DMT400049607	Potato	plastid	59.29	52.87
VIT_08s0007g00070.t01	Wine grape	mitochondrion	47.86	50.38
EER92461	Sorghum	plastid	47.14	39.05
KXG36665	Sorghum	mitochondrion	25.71	34.29
EES10764	Sorghum	mitochondrion	32.14	33.33
KXG26990	Sorghum	plastid	31.43	29.93
EES01954	Sorghum	plastid	29.29	27.89
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	12.86	27.69
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	12.14	25.37
EES16438	Sorghum	nucleus	27.14	23.03
KXG37870	Sorghum	nucleus	27.86	22.94
EES02151	Sorghum	mitochondrion, plastid	22.14	21.23
KXG37189	Sorghum	nucleus	30.0	21.11
EES16016	Sorghum	mitochondrion	35.0	19.6
KXG24163	Sorghum	nucleus	30.0	19.27
KXG36643	Sorghum	mitochondrion	32.14	14.24
OQU88590	Sorghum	nucleus	27.86	12.96
KXG37841	Sorghum	nucleus	26.43	11.71
KXG30823	Sorghum	plastid	26.43	9.23

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EntrezGene:8076539	UniProt:C5YN17	EnsemblPlants:EES14515	ProteinID:EES14515
ProteinID:EES14515.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0080156	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
EnsemblPlantsGene:SORBI_3007G034400	SUPFAM:SSF54928	unigene:Sbi.15191	UniParc:UPI0001A87AF3	RefSeq:XP_002445020.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:3010226..3015612

Molecular Weight (calculated)

15070.7 Da

IEP (calculated)

10.372

GRAVY (calculated)

-0.388

Length

140 amino acids

Sequence
(BLAST)

001: MAAAVARSGF RRMFSVSAFA PPKAPAPRPQ ADPSPNLFVS GLSKRTTTEG LRDAFAKFGE VVHARVVTDR VSGFSKGFGF VRYATTEEAT KGIEGMDGKF
101: LDGWVIFAEY ARPRAPPEQA EMNSPPQQSW GASPGSWGSQ

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.