CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 1
nucleus 4
peroxisome 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90487
KXG38822

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33550.1	EER90487	AT1G32230.1	19548978
AT2G33550.1	KXG38822	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042271_P001	Maize	nucleus, plastid	74.33	80.51
TraesCS3D01G434100.1	Wheat	nucleus	45.33	46.58
HORVU3Hr1G096240.1	Barley	nucleus	46.0	46.31
TraesCS3A01G441300.1	Wheat	nucleus	45.0	45.45
TraesCS3B01G475300.1	Wheat	nucleus, plastid	38.0	37.75
CDX85279	Canola	cytosol	28.0	34.71
Bra005486.1-P	Field mustard	nucleus	34.67	32.7
CDY17185	Canola	cytosol	34.67	32.7
CDY27959	Canola	cytosol	34.0	32.18
KXG30289	Sorghum	plastid	36.67	31.52
Solyc04g045430.2.1	Tomato	nucleus	31.67	30.35
CDY23727	Canola	cytosol	31.67	30.35
Bra021860.1-P	Field mustard	nucleus	32.33	30.31
CDY37710	Canola	cytosol	31.67	29.78
AT2G33550.1	Thale cress	cytosol	31.0	29.62
KXG26157	Sorghum	nucleus	35.0	29.17
KRH36366	Soybean	nucleus	31.33	28.92
KRG93139	Soybean	nucleus	30.67	28.84
VIT_01s0150g00050.t01	Wine grape	nucleus	32.33	28.53
KRH01509	Soybean	nucleus	30.67	27.96
KRH45200	Soybean	nucleus	30.33	27.91
Solyc09g015150.1.1	Tomato	nucleus, plastid	9.67	27.36
Solyc01g065890.1.1	Tomato	cytosol	10.67	26.89
GSMUA_Achr8P00510_001	Banana	nucleus	28.67	26.88
VIT_17s0000g00270.t01	Wine grape	nucleus	30.0	26.55
PGSC0003DMT400036757	Potato	nucleus	28.0	26.09
PGSC0003DMT400087461	Potato	nucleus	26.33	25.65
PGSC0003DMT400087793	Potato	nucleus	26.33	25.65
PGSC0003DMT400087902	Potato	nucleus	21.0	24.9
Solyc03g118230.1.1	Tomato	nucleus	26.33	23.72
Solyc01g065900.1.1	Tomato	nucleus	21.33	22.22
KRH41057	Soybean	nucleus	23.33	21.08
KRH59736	Soybean	nucleus	23.67	19.03
KXG27398	Sorghum	plastid	21.33	16.54
EER93695	Sorghum	nucleus	19.67	16.39

Protein Annotations

EnsemblPlants:OQU88149	EnsemblPlantsGene:SORBI_3003G411500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492
PANTHER:PTHR33492:SF1	PFAM:PF13837	PFscan:PS50090	ProteinID:OQU88149	ProteinID:OQU88149.1	RefSeq:XP_002456886.1
SEG:seg	SUPFAM:SSF46689	UniParc:UPI0001A84ABB	UniProt:A0A1W0W170	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:+:71876183..71878153

Molecular Weight (calculated)

31731.4 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.421

Length

300 amino acids

Sequence
(BLAST)

001: MSANENSPPV EAAAAAAAAA ASTPRSRLPR WTRHETLVLI QARRAMERGG LQLPAVRPRP KWAAVSAYCR RHGVERGPMQ CRKRWGNLSW DLKKIVAWEG
101: KAVAGAGVGA AGDAQHESFW DMRGDQRRAR QLPSSFDREV YDALVCGASA GGGVAAAVMP PDFGDGDLEG VYPQPPIMVM PISVTESDQK KAGAAAAASD
201: KNSTSSHHGG GGGGGFKDSD ATFVADQAEG TATATPPAAA TAKASIEKQV IEALERGNRA LAQQLEAHRS MWDADREQRA ALLRAMDRVA DAVCRIADKL

Best Arabidopsis Sequence Match ( AT2G33550.1 )
(BLAST)

001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM

Arabidopsis Description

ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.