Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021860.1-P | Field mustard | nucleus | 88.82 | 86.88 |
| CDY37710 | Canola | cytosol | 77.96 | 76.49 |
| AT2G33550.1 | Thale cress | cytosol | 68.37 | 68.15 |
| CDY17185 | Canola | cytosol | 65.18 | 64.15 |
| CDX85279 | Canola | cytosol | 48.24 | 62.4 |
| CDY27959 | Canola | cytosol | 62.94 | 62.15 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 10.86 | 52.31 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 45.05 | 41.59 |
| GSMUA_Achr10P... | Banana | nucleus | 43.77 | 40.29 |
| KXG30289 | Sorghum | plastid | 41.53 | 37.25 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 39.62 | 36.58 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 38.98 | 36.53 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 39.62 | 36.15 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 39.62 | 35.63 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 39.62 | 35.43 |
| Zm00001d050583_P001 | Maize | plastid | 41.21 | 34.96 |
| TraesCS5D01G450500.1 | Wheat | plastid | 39.94 | 34.72 |
| Zm00001d016604_P001 | Maize | plastid | 40.58 | 34.7 |
| Zm00001d003889_P001 | Maize | nucleus | 38.66 | 34.67 |
| KXG26157 | Sorghum | nucleus | 39.62 | 34.44 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 30.35 | 34.3 |
| TraesCS5B01G447700.1 | Wheat | plastid | 39.62 | 34.07 |
| TraesCS5A01G443100.1 | Wheat | plastid | 38.98 | 33.98 |
| PGSC0003DMT400036757 | Potato | nucleus | 34.82 | 33.85 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 31.31 | 33.56 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 34.19 | 33.44 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 31.31 | 33.0 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 31.31 | 32.89 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 32.27 | 32.58 |
| Solyc03g118230.1.1 | Tomato | nucleus | 34.19 | 32.13 |
| OQU88149 | Sorghum | nucleus | 30.35 | 31.67 |
| KRH41057 | Soybean | nucleus | 33.23 | 31.33 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 21.41 | 30.04 |
| KRH59736 | Soybean | nucleus | 33.87 | 28.42 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 24.6 | 25.5 |
| Os02t0516800-00 | Rice | nucleus | 31.31 | 21.97 |
| CDX98246 | Canola | nucleus | 19.49 | 16.53 |
| CDY49546 | Canola | nucleus | 18.85 | 15.95 |
| CDY02375 | Canola | nucleus | 18.53 | 15.93 |
| CDX77554 | Canola | nucleus | 18.85 | 15.29 |
Protein Annotations
| EnsemblPlants:CDY23727 | EnsemblPlantsGene:GSBRNA2T00024052001 | Gene3D:1.10.10.60 | GO:A0A078GF37 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY23727 |
| ProteinID:CDY23727.1 | SEG:seg | UniParc:UPI0004EEBD98 | UniProt:A0A078GF37 | MapMan:35.1 | : |
Description
BnaC04g43950DBnaC04g43950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF37]
Coordinates
chrLK032148:+:44745..46223
Molecular Weight (calculated)
34366.4 Da
IEP (calculated)
5.642
GRAVY (calculated)
-0.747
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEQQLGLA VTAVDGDGNG GGGENSAPSN EGGDDSVKTA RLPRWTRQEI LVLIQGKRVA ENRVRRGRAA GMALGSGQME TKWASVSSYC RRHGVNRGPV
101: QCRKRWSNLA GDYKKIKEWE SQVKEETESY WVMRNDVRRE RKLPGFFDKE VYDVVDGGVV PPALALGLAP ASAAAEGVLS ELERREPAPN KLLQDVFMDK
201: EKQAACGADD QGLVKEKDAE AANPEAGSTS QEARKRKRTS ASEDEEKEEE ATKSMDNQLI QILERNGQLL AAQLEVQNTN LKLDREQRKD HGDNLVAVLS
301: KLADAVAKIA DKL
101: QCRKRWSNLA GDYKKIKEWE SQVKEETESY WVMRNDVRRE RKLPGFFDKE VYDVVDGGVV PPALALGLAP ASAAAEGVLS ELERREPAPN KLLQDVFMDK
201: EKQAACGADD QGLVKEKDAE AANPEAGSTS QEARKRKRTS ASEDEEKEEE ATKSMDNQLI QILERNGQLL AAQLEVQNTN LKLDREQRKD HGDNLVAVLS
301: KLADAVAKIA DKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.