Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0397500-00 | Rice | cytosol, nucleus | 15.57 | 80.0 |
| Zm00001d003889_P001 | Maize | nucleus | 75.75 | 72.49 |
| KXG26157 | Sorghum | nucleus | 77.25 | 71.67 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 57.78 | 56.93 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 59.28 | 56.9 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 57.78 | 55.14 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 54.49 | 53.06 |
| Zm00001d016604_P001 | Maize | plastid | 50.9 | 46.45 |
| Zm00001d050583_P001 | Maize | plastid | 51.2 | 46.34 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 44.01 | 43.24 |
| CDX85279 | Canola | cytosol | 31.14 | 42.98 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 39.82 | 41.56 |
| AT2G33550.1 | Thale cress | cytosol | 38.62 | 41.08 |
| KRG93139 | Soybean | nucleus | 39.22 | 41.07 |
| Solyc04g045430.2.1 | Tomato | nucleus | 37.43 | 39.94 |
| CDY27959 | Canola | cytosol | 37.72 | 39.75 |
| KRH45200 | Soybean | nucleus | 38.62 | 39.57 |
| KRH36366 | Soybean | nucleus | 38.32 | 39.38 |
| Bra005486.1-P | Field mustard | nucleus | 37.43 | 39.31 |
| CDY17185 | Canola | cytosol | 37.43 | 39.31 |
| CDY23727 | Canola | cytosol | 36.53 | 38.98 |
| Bra021860.1-P | Field mustard | nucleus | 36.83 | 38.44 |
| KRH01509 | Soybean | nucleus | 37.72 | 38.3 |
| PGSC0003DMT400087793 | Potato | nucleus | 35.03 | 37.99 |
| CDY37710 | Canola | cytosol | 35.93 | 37.62 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 31.14 | 37.55 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 11.68 | 36.79 |
| PGSC0003DMT400087461 | Potato | nucleus | 33.83 | 36.69 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 37.13 | 36.58 |
| Solyc01g065890.1.1 | Tomato | cytosol | 12.57 | 35.29 |
| Solyc01g065900.1.1 | Tomato | nucleus | 27.25 | 31.6 |
| PGSC0003DMT400087902 | Potato | nucleus | 23.65 | 31.23 |
| PGSC0003DMT400036757 | Potato | nucleus | 29.64 | 30.75 |
| Solyc03g118230.1.1 | Tomato | nucleus | 29.34 | 29.43 |
| KRH41057 | Soybean | nucleus | 25.75 | 25.9 |
| Zm00001d034953_P001 | Maize | nucleus | 15.27 | 25.0 |
| KRH59736 | Soybean | nucleus | 27.84 | 24.93 |
| Zm00001d001894_P001 | Maize | mitochondrion | 20.96 | 18.37 |
| Zm00001d013588_P001 | Maize | nucleus | 18.56 | 17.22 |
Protein Annotations
| EnsemblPlants:Zm00001d025275_P001 | EnsemblPlants:Zm00001d025275_T001 | EnsemblPlantsGene:Zm00001d025275 | EntrezGene:103641593 | Gene3D:1.10.10.60 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:AQK43381.1 | SEG:seg |
| UniParc:UPI000221785C | UniProt:K7TNZ1 | MapMan:35.1 | : | : | : |
Description
Putative homeodomain-like transcription factor superfamily protein
Coordinates
chr10:-:112168325..112188744
Molecular Weight (calculated)
36442.3 Da
IEP (calculated)
5.939
GRAVY (calculated)
-0.794
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAGEARGV GTGRGSRLPR WTRQEILVLV EGKRVVEGSG RGRGRGRVRG GEGAEPTKWA AVAEYCRRHG VDRGPVQCRK RWSNLAGDYK KIREWERGYA
101: ARKEASFWDM RNDARRERRL PGFFDREVYD ILEGRAGGNA AALEDVDGKE EEAKAVVHAG RAVQRGGLFS SSEDEDDQEE DAATPSPTPA PAAVAVPIPG
201: EQAVAVPSFL EMARASSLSV HVTEKTTDVP RQASSEQAGA SNEKQSEQIT EDSPTQCGQK RQRSDDNASG EATTNLQGQL VEILDRSSQM VAAQLEAQNV
301: NSRLNREQRK DQVSSLLGVL GKVADALYRI ADEL
101: ARKEASFWDM RNDARRERRL PGFFDREVYD ILEGRAGGNA AALEDVDGKE EEAKAVVHAG RAVQRGGLFS SSEDEDDQEE DAATPSPTPA PAAVAVPIPG
201: EQAVAVPSFL EMARASSLSV HVTEKTTDVP RQASSEQAGA SNEKQSEQIT EDSPTQCGQK RQRSDDNASG EATTNLQGQL VEILDRSSQM VAAQLEAQNV
301: NSRLNREQRK DQVSSLLGVL GKVADALYRI ADEL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.