Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0397500-00 | Rice | cytosol, nucleus | 15.47 | 83.08 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 72.49 | 75.75 |
| KXG26157 | Sorghum | nucleus | 73.07 | 70.83 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 54.73 | 56.34 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 54.73 | 54.89 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 55.01 | 54.86 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 53.3 | 54.23 |
| Zm00001d016604_P001 | Maize | plastid | 50.14 | 47.81 |
| Zm00001d050583_P001 | Maize | plastid | 47.56 | 44.99 |
| CDX85279 | Canola | cytosol | 30.37 | 43.8 |
| AT2G33550.1 | Thale cress | cytosol | 37.54 | 41.72 |
| KRG93139 | Soybean | nucleus | 37.82 | 41.38 |
| KRH36366 | Soybean | nucleus | 38.4 | 41.23 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 39.83 | 40.88 |
| CDY27959 | Canola | cytosol | 36.96 | 40.69 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 37.25 | 40.62 |
| Bra005486.1-P | Field mustard | nucleus | 36.68 | 40.25 |
| CDY17185 | Canola | cytosol | 36.68 | 40.25 |
| Solyc04g045430.2.1 | Tomato | nucleus | 35.53 | 39.62 |
| CDY23727 | Canola | cytosol | 34.67 | 38.66 |
| PGSC0003DMT400087793 | Potato | nucleus | 34.1 | 38.64 |
| Bra021860.1-P | Field mustard | nucleus | 34.96 | 38.12 |
| KRH01509 | Soybean | nucleus | 35.82 | 37.99 |
| CDY37710 | Canola | cytosol | 34.67 | 37.93 |
| PGSC0003DMT400087461 | Potato | nucleus | 33.24 | 37.66 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 29.8 | 37.55 |
| KRH45200 | Soybean | nucleus | 34.96 | 37.42 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 34.96 | 35.99 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 10.89 | 35.85 |
| Solyc01g065890.1.1 | Tomato | cytosol | 11.75 | 34.45 |
| PGSC0003DMT400087902 | Potato | nucleus | 23.21 | 32.02 |
| Solyc01g065900.1.1 | Tomato | nucleus | 26.36 | 31.94 |
| PGSC0003DMT400036757 | Potato | nucleus | 28.37 | 30.75 |
| Solyc03g118230.1.1 | Tomato | nucleus | 27.51 | 28.83 |
| Zm00001d034953_P001 | Maize | nucleus | 15.19 | 25.98 |
| KRH41057 | Soybean | nucleus | 24.64 | 25.9 |
| KRH59736 | Soybean | nucleus | 26.36 | 24.66 |
| Zm00001d001894_P001 | Maize | mitochondrion | 19.2 | 17.59 |
| Zm00001d013588_P001 | Maize | nucleus | 17.77 | 17.22 |
Protein Annotations
| EnsemblPlants:Zm00001d003889_P001 | EnsemblPlants:Zm00001d003889_T001 | EnsemblPlantsGene:Zm00001d003889 | EntrezGene:103646543 | Gene3D:1.10.10.60 | InterPro:IPR017877 |
| InterPro:Myb-like_dom | ncoils:Coil | PANTHER:PTHR33492 | PANTHER:PTHR33492:SF1 | PFAM:PF13837 | PFscan:PS50090 |
| ProteinID:ONM17891.1 | SEG:seg | UniParc:UPI0004DE8CFB | UniProt:A0A1D6EC40 | MapMan:35.1 | : |
Description
Trihelix transcription factor ASR3
Coordinates
chr2:+:65457795..65460979
Molecular Weight (calculated)
37754.1 Da
IEP (calculated)
8.797
GRAVY (calculated)
-0.766
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRVRG GEGAGAGGAA AKPTKWAAVA EYCRRHGVDR GPVQCRKRWS NLAGDYKKIR
101: EWERGYAARK EASFWAMRND ARRERRLPGF FDQEVYDILE GRGAGNAAAL EDAEAKEEEE VKAKAVLHTG RGIQGGGLFS SSEDEDDQED DAATPSPTPT
201: PTPAPAPAPA AVVVPIPGEQ AVPFFARASS LSVHVTEKTD DVLPRQASSE QAGTSKEKQP EQITEDSPAA QCGQKRQRSD DNASGRAATN LQGQLVEILD
301: RSSQMVAAQL EAQNMNSRLD REQRKDQVSS LLGVLGKVAD ALYRIADKL
101: EWERGYAARK EASFWAMRND ARRERRLPGF FDQEVYDILE GRGAGNAAAL EDAEAKEEEE VKAKAVLHTG RGIQGGGLFS SSEDEDDQED DAATPSPTPT
201: PTPAPAPAPA AVVVPIPGEQ AVPFFARASS LSVHVTEKTD DVLPRQASSE QAGTSKEKQP EQITEDSPAA QCGQKRQRSD DNASGRAATN LQGQLVEILD
301: RSSQMVAAQL EAQNMNSRLD REQRKDQVSS LLGVLGKVAD ALYRIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.