Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g005270.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | Solyc08g005270.2.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036757 | Potato | nucleus | 73.27 | 75.78 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 8.11 | 41.54 |
| AT2G33550.1 | Thale cress | cytosol | 33.33 | 35.35 |
| CDY37710 | Canola | cytosol | 33.63 | 35.11 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 35.74 | 35.1 |
| CDX85279 | Canola | cytosol | 25.23 | 34.71 |
| CDY27959 | Canola | cytosol | 33.03 | 34.7 |
| Bra021860.1-P | Field mustard | nucleus | 33.33 | 34.69 |
| Solyc01g065890.1.1 | Tomato | cytosol | 12.31 | 34.45 |
| Bra005486.1-P | Field mustard | nucleus | 32.73 | 34.28 |
| CDY17185 | Canola | cytosol | 32.73 | 34.28 |
| Solyc04g045430.2.1 | Tomato | nucleus | 32.13 | 34.19 |
| CDY23727 | Canola | cytosol | 32.13 | 34.19 |
| GSMUA_Achr10P... | Banana | nucleus | 33.03 | 32.35 |
| KRH41057 | Soybean | nucleus | 31.83 | 31.93 |
| KXG30289 | Sorghum | plastid | 33.03 | 31.52 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 9.91 | 31.13 |
| TraesCS5A01G443100.1 | Wheat | plastid | 32.13 | 29.8 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 29.43 | 29.34 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 24.02 | 28.88 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 29.13 | 28.61 |
| TraesCS5D01G450500.1 | Wheat | plastid | 30.93 | 28.61 |
| TraesCS5B01G447700.1 | Wheat | plastid | 31.23 | 28.57 |
| Zm00001d016604_P001 | Maize | plastid | 31.23 | 28.42 |
| KXG26157 | Sorghum | nucleus | 30.63 | 28.33 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 18.92 | 28.25 |
| Zm00001d050583_P001 | Maize | plastid | 31.23 | 28.18 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 27.03 | 28.12 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 29.13 | 27.87 |
| Solyc01g065900.1.1 | Tomato | nucleus | 24.02 | 27.78 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 24.32 | 27.74 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 28.53 | 27.7 |
| Zm00001d003889_P001 | Maize | nucleus | 28.83 | 27.51 |
| KRH59736 | Soybean | nucleus | 30.63 | 27.35 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 24.32 | 27.27 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 24.32 | 27.18 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 28.53 | 27.14 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 25.23 | 27.1 |
| OQU88149 | Sorghum | nucleus | 23.72 | 26.33 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 20.42 | 22.52 |
| Solyc02g069390.1.1 | Tomato | nucleus | 17.42 | 18.95 |
| Os02t0516800-00 | Rice | nucleus | 24.02 | 17.94 |
| Solyc02g030460.2.1 | Tomato | nucleus | 17.42 | 17.16 |
Protein Annotations
| EnsemblPlants:Solyc03g118230.1.1 | EnsemblPlantsGene:Solyc03g118230.1 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | UniParc:UPI0002767C2B |
| UniProt:K4BLX4 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:67159217..67160369
Molecular Weight (calculated)
37848.1 Da
IEP (calculated)
5.386
GRAVY (calculated)
-0.982
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTLGSTEMN ENAATLADGQ QQKMTEEGKS KTPRHSRWTR QETLVLIQGK KIAEERAHRG RKSTSVFGSD KPEPKWDSVS SYCRQHGADR GPVQCRKRWS
101: NMISDFKKIK TWETQAYGSS ESYWIISNDL RREKRLPGSF DREVYNVLDG KEFTAEAYQL ALVTITTDEK LDYGVETVEE EEAEEGEEEN DNVSHTGEYT
201: MEDDVMHPAA EEVGSSPLKE HIVIDKKAKS IPSPVPRSGT AEGEQPGPDF WNSPMYKDRL KKRRLSPDGC IDSNLGYKLL KTLERNTNIL HSQLDAQMEN
301: RQREMEQQKE QTNSLIAVLN KVADAVARVA DKM
101: NMISDFKKIK TWETQAYGSS ESYWIISNDL RREKRLPGSF DREVYNVLDG KEFTAEAYQL ALVTITTDEK LDYGVETVEE EEAEEGEEEN DNVSHTGEYT
201: MEDDVMHPAA EEVGSSPLKE HIVIDKKAKS IPSPVPRSGT AEGEQPGPDF WNSPMYKDRL KKRRLSPDGC IDSNLGYKLL KTLERNTNIL HSQLDAQMEN
301: RQREMEQQKE QTNSLIAVLN KVADAVARVA DKM
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.