Factsheet for TraesCS3A01G441300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33550.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT2G33550.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT2G33550.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT2G33550.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT2G33550.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT2G33550.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G434100.1	Wheat	nucleus	90.91	92.47
HORVU3Hr1G096240.1	Barley	nucleus	80.81	80.54
TraesCS3B01G475300.1	Wheat	nucleus, plastid	69.02	67.88
Zm00001d042271_P001	Maize	nucleus, plastid	46.13	49.46
OQU88149	Sorghum	nucleus	45.45	45.0
CDX85279	Canola	cytosol	26.94	33.06
Solyc04g045430.2.1	Tomato	nucleus	34.01	32.27
CDY27959	Canola	cytosol	33.67	31.55
Bra005486.1-P	Field mustard	nucleus	33.67	31.45
CDY17185	Canola	cytosol	33.67	31.45
CDY23727	Canola	cytosol	33.0	31.31
AT2G33550.1	Thale cress	cytosol	32.66	30.89
CDY37710	Canola	cytosol	32.66	30.41
Bra021860.1-P	Field mustard	nucleus	32.66	30.31
VIT_01s0150g00050.t01	Wine grape	nucleus	33.67	29.41
KRH36366	Soybean	nucleus	31.65	28.92
KRG93139	Soybean	nucleus	30.98	28.84
KRH01509	Soybean	nucleus	30.98	27.96
VIT_17s0000g00270.t01	Wine grape	nucleus	31.65	27.73
TraesCS2A01G287600.2	Wheat	nucleus	31.65	27.73
KRH45200	Soybean	nucleus	30.3	27.61
TraesCS5A01G443100.1	Wheat	plastid	33.33	27.58
Solyc09g015150.1.1	Tomato	nucleus, plastid	9.76	27.36
GSMUA_Achr8P00510_001	Banana	nucleus	29.29	27.19
PGSC0003DMT400087793	Potato	nucleus	27.95	26.95
PGSC0003DMT400087461	Potato	nucleus	27.61	26.62
Solyc01g065890.1.1	Tomato	cytosol	10.44	26.05
PGSC0003DMT400036757	Potato	nucleus	27.27	25.16
PGSC0003DMT400087902	Potato	nucleus	20.88	24.51
Solyc03g118230.1.1	Tomato	nucleus	27.27	24.32
Solyc01g065900.1.1	Tomato	nucleus	21.21	21.88
KRH41057	Soybean	nucleus	23.57	21.08
KRH59736	Soybean	nucleus	24.58	19.57
TraesCS2A01G549300.1	Wheat	nucleus, plastid	24.24	17.69
TraesCS4A01G294700.2	Wheat	nucleus	19.53	17.58

Protein Annotations

EnsemblPlants:TraesCS3A01G441300.1	EnsemblPlantsGene:TraesCS3A01G441300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492
PANTHER:PTHR33492:SF1	PFAM:PF13837	PFscan:PS50090	SEG:seg	SUPFAM:SSF46689	MapMan:35.1

Description

No Description!

Coordinates

chr3A:+:683442450..683443431

Molecular Weight (calculated)

32347.8 Da

IEP (calculated)

7.052

GRAVY (calculated)

-0.678

Length

297 amino acids

Sequence
(BLAST)

001: MMSANGDSPA GAAVTTPRSR LPRWTRHETL VLIQAKRVTE QRAAQPVRLK WAVVSAYCRR HGVERGPMQC RKRWGNLSWD LKKIVAWEKK HAAAVAAVAG
101: DADSAAPERE SFWDMRGEER RARQLPSSFD REVYDAIVGA GGAANQLKPD SAEEMELADD ADEHPPSPMM VMPIQARMYV PPASSQSQRE CSDPATESAK
201: KPASDKNSTS QQDSEATFGA GVGAEDTDTA TATPTAGAGT TSMGRQMSEA LERGNRLLAE QLEAQRANWE ADREHRRALL AAVNKLADAA ARIAERL

Best Arabidopsis Sequence Match ( AT2G33550.1 )
(BLAST)

001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM

Arabidopsis Description

ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.