Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01920.t01 | |
| VIT_02s0012g01930.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | VIT_02s0012g01920.t01 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | VIT_02s0012g01930.t01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 49.85 | 49.71 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 9.44 | 49.23 |
| AT2G33550.1 | Thale cress | cytosol | 42.48 | 45.86 |
| CDX85279 | Canola | cytosol | 32.45 | 45.45 |
| CDY37710 | Canola | cytosol | 42.77 | 45.45 |
| CDY23727 | Canola | cytosol | 41.59 | 45.05 |
| CDY27959 | Canola | cytosol | 41.89 | 44.8 |
| Bra005486.1-P | Field mustard | nucleus | 41.59 | 44.34 |
| CDY17185 | Canola | cytosol | 41.59 | 44.34 |
| Bra021860.1-P | Field mustard | nucleus | 41.59 | 44.06 |
| GSMUA_Achr10P... | Banana | nucleus | 42.48 | 42.35 |
| PGSC0003DMT400036757 | Potato | nucleus | 38.05 | 40.06 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 36.58 | 38.75 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 37.17 | 37.17 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 36.58 | 37.13 |
| KXG30289 | Sorghum | plastid | 37.46 | 36.39 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 37.17 | 36.21 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 37.17 | 36.0 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 36.28 | 35.86 |
| Solyc03g118230.1.1 | Tomato | nucleus | 35.1 | 35.74 |
| KXG26157 | Sorghum | nucleus | 37.76 | 35.56 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 23.3 | 35.43 |
| Zm00001d003889_P001 | Maize | nucleus | 35.99 | 34.96 |
| TraesCS5A01G443100.1 | Wheat | plastid | 36.87 | 34.82 |
| Zm00001d050583_P001 | Maize | plastid | 37.76 | 34.69 |
| TraesCS5D01G450500.1 | Wheat | plastid | 36.58 | 34.44 |
| Zm00001d016604_P001 | Maize | plastid | 36.58 | 33.88 |
| TraesCS5B01G447700.1 | Wheat | plastid | 36.28 | 33.79 |
| KRH41057 | Soybean | nucleus | 33.04 | 33.73 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 27.43 | 33.57 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 30.38 | 33.23 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 28.02 | 31.88 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 27.73 | 31.65 |
| KRH59736 | Soybean | nucleus | 34.51 | 31.37 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 26.84 | 31.16 |
| OQU88149 | Sorghum | nucleus | 26.55 | 30.0 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 23.01 | 25.83 |
| Os02t0516800-00 | Rice | nucleus | 28.91 | 21.97 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 15.04 | 17.41 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100266238 | wikigene:100266238 | MapMan:35.1 | ProteinID:CBI15754 | ProteinID:CBI15754.3 |
| ncoils:Coil | UniProt:D7SH74 | EMBL:FN594950 | InterPro:IPR017877 | EntrezGene:LOC100266238 | wikigene:LOC100266238 |
| InterPro:Myb-like_dom | PFAM:PF13837 | PFscan:PS50090 | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | UniParc:UPI0001BE0FC3 |
| ArrayExpress:VIT_17s0000g00270 | EnsemblPlantsGene:VIT_17s0000g00270 | EnsemblPlants:VIT_17s0000g00270.t01 | RefSeq:XP_002280881 | RefSeq:XP_002280881.1 | SEG:seg |
Description
No Description!
Coordinates
chr17:+:179440..181160
Molecular Weight (calculated)
38198.4 Da
IEP (calculated)
6.287
GRAVY (calculated)
-0.876
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPEHSDVHE NAVGVGVGVS NGIDGGDDKN KVARHPRWTR QETFVLIQGK KIAENRVRRG RRSSSAFGSD QVEPKWDSVS SYCRRHGVNR GPVQCRKRWS
101: NLVGDFKKIK TWESEVREDA ESFWVLRNDL RRERKLPGFF DREVYDVLDG RAFSATAFPL ALVSAMPDGE EEEEEEEAVF DSGRQAAAED GLFSDSEQLG
201: QEEASGSLEK ETTAATESPT QTTPIPLPIS ERKFQKFYQG CTSQGKQKGK QHCSDAWTGP MSEERWKRRR VSVDGCAETN MEEQLIKVLE RNSKRLNAQL
301: EAQNVNSQLD RDQRKDHANS LVAALSKLTD AIVRIADKL
101: NLVGDFKKIK TWESEVREDA ESFWVLRNDL RRERKLPGFF DREVYDVLDG RAFSATAFPL ALVSAMPDGE EEEEEEEAVF DSGRQAAAED GLFSDSEQLG
201: QEEASGSLEK ETTAATESPT QTTPIPLPIS ERKFQKFYQG CTSQGKQKGK QHCSDAWTGP MSEERWKRRR VSVDGCAETN MEEQLIKVLE RNSKRLNAQL
301: EAQNVNSQLD RDQRKDHANS LVAALSKLTD AIVRIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.