CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028661_P001	Maize	plastid	88.17	89.76
TraesCS4B01G204600.1	Wheat	plastid	78.7	77.78
TraesCS4D01G205500.1	Wheat	plastid	78.7	77.33
TraesCS4A01G099700.1	Wheat	plastid	78.11	76.74
Os03t0278800-00	Rice	plastid	75.74	73.99
VIT_08s0040g03330.t01	Wine grape	plastid	56.8	68.57
HORVU4Hr1G059000.4	Barley	plastid	76.92	67.36
KRG95817	Soybean	mitochondrion	53.85	65.47
KRH67547	Soybean	mitochondrion	53.25	64.75
Bra005189.1-P	Field mustard	plastid	52.66	61.81
Solyc10g084630.1.1	Tomato	mitochondrion	49.7	60.87
CDX74955	Canola	plastid	52.07	60.69
CDX91368	Canola	plastid	52.07	60.69
GSMUA_Achr6P15340_001	Banana	plastid	58.58	56.25
PGSC0003DMT400028726	Potato	nucleus	47.34	54.79
AT2G37510.2	Thale cress	mitochondrion, plastid	52.66	53.29
EES14515	Sorghum	plastid	39.05	47.14
EER97356	Sorghum	plastid	33.14	42.75
EES10764	Sorghum	mitochondrion	30.18	37.78
KXG36665	Sorghum	mitochondrion	22.49	36.19
KXG26990	Sorghum	plastid	28.99	33.33
EES01954	Sorghum	plastid	26.04	29.93
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	11.24	29.23
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	10.65	26.87
EES16438	Sorghum	nucleus	23.08	23.64
KXG37870	Sorghum	nucleus	23.08	22.94
KXG37189	Sorghum	nucleus	24.26	20.6
EES16016	Sorghum	mitochondrion	28.99	19.6
EES02151	Sorghum	mitochondrion, plastid	16.57	19.18
KXG24163	Sorghum	nucleus	22.49	17.43
KXG36643	Sorghum	mitochondrion	28.99	15.51
OQU88590	Sorghum	nucleus	21.89	12.29
KXG37841	Sorghum	nucleus	21.89	11.71
KXG30823	Sorghum	plastid	25.44	10.72

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8084916	UniProt:C5WPC9	EnsemblPlants:EER92461	ProteinID:EER92461
ProteinID:EER92461.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G417400	SUPFAM:SSF54928	UniParc:UPI0001A82C7C	RefSeq:XP_002465463.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:69845245..69852995

Molecular Weight (calculated)

17822.3 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.099

Length

169 amino acids

Sequence
(BLAST)

001: MAAASAAPAL LRRLLCSSTP ASASASVVLR AAFCSSPGFG PSPPSSMFGD GTEVANVPPL TTPKLFVSGL SRLTTDEKLQ GAFAPFGRIL EAKVVTDRVS
101: GRSKGFGFVR YATIEEAEKA RQEMNAKFLD GWVIFVDPAK PRQPKPAPEQ DTSSSHVGFT TNKTVGWCG

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.