Factsheet for GSMUA_Achr6P15340_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g03330.t01	Wine grape	plastid	59.09	74.29
KRG95817	Soybean	mitochondrion	53.41	67.63
KRH67547	Soybean	mitochondrion	51.7	65.47
TraesCS4D01G205500.1	Wheat	plastid	62.5	63.95
TraesCS4B01G204600.1	Wheat	plastid	61.93	63.74
Os03t0278800-00	Rice	plastid	61.93	63.01
Solyc10g084630.1.1	Tomato	mitochondrion	48.86	62.32
TraesCS4A01G099700.1	Wheat	plastid	60.23	61.63
Bra005189.1-P	Field mustard	plastid	48.86	59.72
CDX74955	Canola	plastid	48.3	58.62
CDX91368	Canola	plastid	48.3	58.62
EER92461	Sorghum	plastid	56.25	58.58
Zm00001d028661_P001	Maize	plastid	55.11	58.43
PGSC0003DMT400028726	Potato	nucleus	47.16	56.85
HORVU4Hr1G059000.4	Barley	plastid	61.93	56.48
AT2G37510.2	Thale cress	mitochondrion, plastid	50.57	53.29
GSMUA_Achr11P...	Banana	mitochondrion	27.84	45.37
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	28.98	44.35
GSMUA_Achr8P07380_001	Banana	mitochondrion	32.95	42.96
GSMUA_Achr6P35640_001	Banana	nucleus	28.98	36.69
GSMUA_Achr6P34250_001	Banana	mitochondrion	21.02	33.64
GSMUA_Achr5P15860_001	Banana	plastid	32.39	33.53
GSMUA_Achr2P19090_001	Banana	mitochondrion	18.75	31.13
GSMUA_Achr7P02750_001	Banana	mitochondrion	25.0	29.33
GSMUA_Achr7P27650_001	Banana	nucleus	22.16	29.32
GSMUA_Achr11P...	Banana	mitochondrion	21.02	28.03
GSMUA_Achr8P05200_001	Banana	cytosol	22.73	25.81
GSMUA_Achr4P16080_001	Banana	mitochondrion	26.7	24.74
GSMUA_Achr4P14550_001	Banana	nucleus	22.16	24.68
GSMUA_Achr3P30570_001	Banana	plasma membrane	23.3	24.12
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	19.32	20.24
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	21.59	19.9
GSMUA_Achr9P07090_001	Banana	mitochondrion	26.14	19.33
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	20.45	17.56
GSMUA_Achr4P03230_001	Banana	mitochondrion	25.0	17.19
GSMUA_Achr2P01230_001	Banana	nucleus	27.84	15.71
GSMUA_Achr2P12550_001	Banana	nucleus	18.18	14.29
GSMUA_Achr4P22370_001	Banana	nucleus	19.89	11.25
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	20.45	10.43

Protein Annotations

EnsemblPlants:GSMUA_Achr6P15340_001	EnsemblPlants:GSMUA_Achr6T15340_001	EnsemblPlantsGene:GSMUA_Achr6G15340_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002967FE5	UniProt:M0T782	MapMan:35.1	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G15340_001]

Coordinates

chr6:-:10222213..10225839

Molecular Weight (calculated)

19170.6 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.380

Length

176 amino acids

Sequence
(BLAST)

001: MALSSSSFAL RRLLRVSSSA SLPQWTWSPL SAYRQNSSSS SSSSSSSPSP SIFPFDDDAA ASNLPPLTTP KLFVSGLSRL TTDDKLKEAF SPYGQLLEAK
101: VIADRISGRS KGFGFVRYAT IEEADKARHG MNAKFLDGWV IFVDPAKPRE PRPQKPAEPE PFEAGLRINK TVGWCG

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.