Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g084630.1.1 | Tomato | mitochondrion | 81.51 | 86.23 |
| KRH67547 | Soybean | mitochondrion | 63.01 | 66.19 |
| KRG95817 | Soybean | mitochondrion | 61.64 | 64.75 |
| VIT_08s0040g03330.t01 | Wine grape | plastid | 60.96 | 63.57 |
| Bra005189.1-P | Field mustard | plastid | 54.79 | 55.56 |
| CDX74955 | Canola | plastid | 54.11 | 54.48 |
| CDX91368 | Canola | plastid | 54.11 | 54.48 |
| Os03t0278800-00 | Rice | plastid | 57.53 | 48.55 |
| TraesCS4B01G204600.1 | Wheat | plastid | 55.48 | 47.37 |
| EER92461 | Sorghum | plastid | 54.79 | 47.34 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 56.85 | 47.16 |
| TraesCS4D01G205500.1 | Wheat | plastid | 55.48 | 47.09 |
| Zm00001d028661_P001 | Maize | plastid | 53.42 | 46.99 |
| TraesCS4A01G099700.1 | Wheat | plastid | 54.11 | 45.93 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 52.05 | 45.51 |
| HORVU4Hr1G059000.4 | Barley | plastid | 54.79 | 41.45 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 34.25 | 38.76 |
| PGSC0003DMT400049607 | Potato | plastid | 36.3 | 33.76 |
| PGSC0003DMT400001786 | Potato | nucleus | 14.38 | 30.0 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 30.14 | 29.73 |
| PGSC0003DMT400022733 | Potato | plastid | 31.51 | 28.22 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 28.77 | 27.63 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 27.4 | 27.59 |
| PGSC0003DMT400084266 | Potato | extracellular | 24.66 | 22.36 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 22.6 | 22.15 |
| PGSC0003DMT400083014 | Potato | nucleus | 24.66 | 21.69 |
| PGSC0003DMT400084258 | Potato | nucleus | 24.66 | 21.69 |
| PGSC0003DMT400084290 | Potato | nucleus | 24.66 | 21.69 |
| PGSC0003DMT400076497 | Potato | nucleus | 30.14 | 21.46 |
| PGSC0003DMT400001879 | Potato | cytosol | 25.34 | 21.02 |
| PGSC0003DMT400045627 | Potato | nucleus | 29.45 | 20.09 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 27.4 | 15.94 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 25.34 | 14.07 |
| PGSC0003DMT400043581 | Potato | nucleus | 23.97 | 12.92 |
| PGSC0003DMT400003685 | Potato | nucleus | 26.71 | 12.87 |
| PGSC0003DMT400050134 | Potato | plastid | 32.88 | 12.0 |
| PGSC0003DMT400079815 | Potato | nucleus | 21.92 | 10.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028726 | EnsemblPlantsGene:PGSC0003DMG400011058 | EntrezGene:102598320 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45392 | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG400011058 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295B942 | UniProt:M1ARL3 | MapMan:35.1 | : |
Description
RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011058]
Coordinates
chr10:+:54494769..54498561
Molecular Weight (calculated)
15596.5 Da
IEP (calculated)
8.466
GRAVY (calculated)
-0.313
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAGVGDGGG GGAAAAILFS EKLKGEFSSI RLNSTLTSPK LFVSGLSRYT SDENLKKAFE EFGCLTEAKV ITDRATGRSK GFGFVSYETI EEAEKAREGM
101: NAKFLDGWVI FVDPAKPSMP RAPPPPPQDP LNFGITTNKT VGWTGR
101: NAKFLDGWVI FVDPAKPSMP RAPPPPPQDP LNFGITTNKT VGWTGR
001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.