Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 64.29 | 69.23 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 62.86 | 65.67 |
| KRH17905 | Soybean | cytosol, mitochondrion, nucleus | 60.0 | 50.6 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 95.71 | 47.52 |
| VIT_12s0059g01210.t01 | Wine grape | mitochondrion | 70.0 | 35.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 64.29 | 34.09 |
| KRH50325 | Soybean | vacuole | 64.29 | 32.14 |
| AT3G08000.1 | Thale cress | plastid | 64.29 | 31.47 |
| TraesCS3B01G454200.1 | Wheat | mitochondrion | 62.86 | 30.14 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 62.86 | 30.14 |
| CDY28003 | Canola | plastid | 58.57 | 28.47 |
| Bra029692.1-P | Field mustard | mitochondrion | 55.71 | 27.27 |
| CDY35978 | Canola | mitochondrion, plastid | 55.71 | 27.27 |
| Os01t0916600-01 | Rice | mitochondrion | 44.29 | 20.67 |
| Zm00001d012052_P001 | Maize | mitochondrion, plastid | 41.43 | 18.59 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 37.14 | 17.93 |
| TraesCS3D01G417800.1 | Wheat | plastid | 44.29 | 17.61 |
| HORVU3Hr1G093400.1 | Barley | plastid | 40.0 | 16.67 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 35.71 | 16.45 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 27.14 | 14.73 |
| PGSC0003DMT400028726 | Potato | nucleus | 30.0 | 14.38 |
| PGSC0003DMT400084266 | Potato | extracellular | 32.86 | 14.29 |
| PGSC0003DMT400084290 | Potato | nucleus | 32.86 | 13.86 |
| PGSC0003DMT400083014 | Potato | nucleus | 32.86 | 13.86 |
| PGSC0003DMT400084258 | Potato | nucleus | 32.86 | 13.86 |
| PGSC0003DMT400001879 | Potato | cytosol | 32.86 | 13.07 |
| PGSC0003DMT400022733 | Potato | plastid | 28.57 | 12.27 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 25.71 | 12.08 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 42.86 | 11.95 |
| PGSC0003DMT400076497 | Potato | nucleus | 32.86 | 11.22 |
| PGSC0003DMT400049607 | Potato | plastid | 24.29 | 10.83 |
| PGSC0003DMT400045627 | Potato | nucleus | 32.86 | 10.75 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 38.57 | 10.27 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 21.43 | 10.14 |
| PGSC0003DMT400003685 | Potato | nucleus | 42.86 | 9.9 |
| PGSC0003DMT400043581 | Potato | nucleus | 30.0 | 7.75 |
| PGSC0003DMT400079815 | Potato | nucleus | 25.71 | 5.66 |
| PGSC0003DMT400050134 | Potato | plastid | 24.29 | 4.25 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001786 | EnsemblPlantsGene:PGSC0003DMG402000669 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44202 | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG402000669 | SUPFAM:SSF54928 | UniParc:UPI000295DDEC |
| UniProt:M0ZJ32 | MapMan:35.2 | : | : | : | : |
Description
Glycine-rich RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402000669]
Coordinates
chr7:-:45015817..45019912
Molecular Weight (calculated)
7716.2 Da
IEP (calculated)
10.616
GRAVY (calculated)
-0.623
Length
70 amino acids
Sequence
(BLAST)
(BLAST)
1: MYDKETGRSR GFGFVYFSKD EEASSAKDSM DGKAFLGRPL RVSFALEKVR GAPVVVPRLT GTGNADRKTR
001: MMKNGIELLV RRVSAIPQHS ISSSFHFLPQ FCTSSSASPS SKLFIGGLSW SVDEQSLKDA FSSFGEVAEV RIAYDKGSGR SRGFGFVDFA EEGDALSAKD
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK
Arabidopsis Description
At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.