Factsheet for PGSC0003DMT400003685

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
nucleus 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088790.2.1	Tomato	extracellular, plastid	91.09	73.99
PGSC0003DMT400084266	Potato	extracellular	24.42	45.96
VIT_17s0000g07330.t01	Wine grape	plastid	41.91	45.85
PGSC0003DMT400064758	Potato	mitochondrion	37.95	45.82
Os12t0502200-01	Rice	mitochondrion	38.61	45.35
PGSC0003DMT400083014	Potato	nucleus	24.75	45.18
PGSC0003DMT400084290	Potato	nucleus	24.75	45.18
PGSC0003DMT400084258	Potato	nucleus	24.75	45.18
PGSC0003DMT400040748	Potato	mitochondrion	21.45	44.83
PGSC0003DMT400001879	Potato	cytosol	25.74	44.32
KRH01278	Soybean	mitochondrion, nucleus, plastid	34.98	43.44
TraesCS3A01G428400.1	Wheat	mitochondrion	32.01	42.92
PGSC0003DMT400001786	Potato	nucleus	9.9	42.86
GSMUA_Achr9P07090_001	Banana	mitochondrion	33.66	42.86
EES16016	Sorghum	mitochondrion	35.31	42.8
PGSC0003DMT400053017	Potato	mitochondrion, plastid	21.45	42.76
TraesCS3D01G424100.1	Wheat	mitochondrion	30.69	42.47
KRH45033	Soybean	nucleus, plastid	33.0	40.82
CDY16825	Canola	plastid	35.31	40.68
Bra035944.1-P	Field mustard	plastid	34.65	39.92
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	34.32	39.54
TraesCS3B01G465800.1	Wheat	mitochondrion	30.03	39.39
GSMUA_Achr4P03230_001	Banana	mitochondrion	33.0	39.06
Bra012986.1-P	Field mustard	mitochondrion	38.94	38.69
Zm00001d041750_P001	Maize	mitochondrion	33.0	38.31
Os07t0602600-01	Rice	mitochondrion	30.03	38.24
Zm00001d023734_P003	Maize	nucleus, plastid	34.98	36.93
Os10t0321700-01	Rice	mitochondrion	37.95	36.28
AT5G61030.1	Thale cress	mitochondrion	36.96	36.25
TraesCS2D01G184200.1	Wheat	mitochondrion	38.28	35.69
HORVU5Hr1G110370.1	Barley	mitochondrion	34.32	35.49
Zm00001d022065_P001	Maize	mitochondrion	35.64	35.06
TraesCS5B01G470700.1	Wheat	mitochondrion	35.31	34.85
CDY02175	Canola	mitochondrion	38.94	34.81
TraesCS5D01G473100.1	Wheat	mitochondrion	34.98	34.64
TraesCS5A01G460900.1	Wheat	mitochondrion	34.65	34.43
KXG36643	Sorghum	mitochondrion	35.31	33.86
TraesCS2B01G203200.1	Wheat	mitochondrion	35.64	33.86
HORVU3Hr1G094330.2	Barley	mitochondrion	33.0	32.68
PGSC0003DMT400072597	Potato	mitochondrion	13.86	32.56
CDX87197	Canola	plastid	34.65	31.91
PGSC0003DMT400076497	Potato	nucleus	19.47	28.78
PGSC0003DMT400028726	Potato	nucleus	12.87	26.71
PGSC0003DMT400045627	Potato	nucleus	18.48	26.17
PGSC0003DMT400049607	Potato	plastid	13.53	26.11
PGSC0003DMT400043581	Potato	nucleus	22.44	25.09
PGSC0003DMT400056141	Potato	mitochondrion	11.88	24.32
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	11.88	24.16
PGSC0003DMT400022733	Potato	plastid	11.55	21.47
PGSC0003DMT400079815	Potato	nucleus	19.47	18.55
TraesCS2A01G176700.1	Wheat	mitochondrion	33.66	13.92
PGSC0003DMT400050134	Potato	plastid	10.89	8.25

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	ProteinID:AAL07519	ProteinID:AAL07519.1	EMBL:AY048973	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZM56
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400001453	PGSC:PGSC0003DMG400001453	EnsemblPlants:PGSC0003DMT400003685	PRINTS:PR01228
PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00029528A7	SEG:seg	:	:	:	:

Description

RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001453]

Coordinates

chr2:+:45627553..45631494

Molecular Weight (calculated)

30235.9 Da

IEP (calculated)

4.359

GRAVY (calculated)

-0.877

Length

303 amino acids

Sequence
(BLAST)

001: MSSSKLFVGG LSYGTDESSL KETFSQYGEV IEARVILDRE TGRSRGFGFI SFPSSEEATS AMQAMDGQDL HGRRIKVNYA TEKRRDGFGG GYGGGNYGGE
101: GGNFAGGGGY AASNYGGGGG GFSGGYNSSG GGGYNSAGGS GYGSSSGYTY GGEGGNVAGS GGYPTNNYGG GGTEFSSGNS SAGGYSSYGG GSSNYGNNSS
201: PVEGGNYGSS TPNINHSGQG SSFSGGYGGG NSGNDFVGAP SNNNSFANTG FGGSSEASYN GSQEQVSADQ GTQSINEHLG QETPEGNYRD NDDKPKDYAN
301: TRG

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.