Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005189.1-P | Field mustard | plastid | 69.46 | 80.56 |
| CDX74955 | Canola | plastid | 69.46 | 80.0 |
| CDX91368 | Canola | plastid | 68.86 | 79.31 |
| VIT_08s0040g03330.t01 | Wine grape | plastid | 58.68 | 70.0 |
| KRG95817 | Soybean | mitochondrion | 56.29 | 67.63 |
| KRH67547 | Soybean | mitochondrion | 55.09 | 66.19 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 48.5 | 58.7 |
| Zm00001d028661_P001 | Maize | plastid | 53.89 | 54.22 |
| TraesCS4B01G204600.1 | Wheat | plastid | 54.49 | 53.22 |
| TraesCS4D01G205500.1 | Wheat | plastid | 54.49 | 52.91 |
| EER92461 | Sorghum | plastid | 53.29 | 52.66 |
| PGSC0003DMT400028726 | Potato | nucleus | 45.51 | 52.05 |
| TraesCS4A01G099700.1 | Wheat | plastid | 53.29 | 51.74 |
| Os03t0278800-00 | Rice | plastid | 53.29 | 51.45 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 53.29 | 50.57 |
| HORVU4Hr1G059000.4 | Barley | plastid | 54.49 | 47.15 |
| AT4G13860.1 | Thale cress | cytosol | 22.16 | 42.53 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 37.72 | 40.38 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 28.14 | 34.56 |
| AT3G46020.1 | Thale cress | mitochondrion | 20.96 | 34.31 |
| AT5G06210.1 | Thale cress | mitochondrion | 29.94 | 34.25 |
| AT2G27330.1 | Thale cress | mitochondrion | 22.16 | 31.9 |
| AT4G13850.1 | Thale cress | mitochondrion | 29.94 | 31.65 |
| AT1G18630.1 | Thale cress | mitochondrion | 27.54 | 29.68 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 18.56 | 27.43 |
| AT3G08000.1 | Thale cress | plastid | 22.75 | 26.57 |
| AT1G73530.1 | Thale cress | plastid | 26.95 | 24.86 |
| AT4G39260.1 | Thale cress | nucleus | 25.15 | 24.85 |
| AT5G59860.1 | Thale cress | nucleus | 20.96 | 22.29 |
| AT2G21660.1 | Thale cress | nucleus | 22.16 | 21.02 |
| AT3G26420.1 | Thale cress | nucleus | 23.95 | 16.33 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 23.95 | 13.84 |
| AT5G61030.1 | Thale cress | mitochondrion | 23.95 | 12.95 |
| AT3G20930.2 | Thale cress | plastid | 25.75 | 11.35 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 19.76 | 10.65 |
| AT1G60650.2 | Thale cress | nucleus | 17.96 | 10.27 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:818327 | UniProt:A0A1P8B228 | ProteinID:ANM62964.1 | ArrayExpress:AT2G37510 |
| EnsemblPlantsGene:AT2G37510 | RefSeq:AT2G37510 | TAIR:AT2G37510 | RefSeq:AT2G37510-TAIR-G | EnsemblPlants:AT2G37510.2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001325085.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00084969FB | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
Coordinates
chr2:-:15742980..15744606
Molecular Weight (calculated)
18598.3 Da
IEP (calculated)
10.075
GRAVY (calculated)
-0.186
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDGNVTLGFL NPIYIEHQIN RFCFHVAARV ITDRDSGRSK
101: GFGFVTYATI EDAEKAKAEM NAKFLDGWVI FVDPARPREP RRPLQQEPLR PSSESGFTTN KTIGWCK
101: GFGFVTYATI EDAEKAKAEM NAKFLDGWVI FVDPARPREP RRPLQQEPLR PSSESGFTTN KTIGWCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.