Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82066 | Canola | cytosol, nucleus, plastid | 38.12 | 71.88 |
| Bra008100.1-P | Field mustard | cytosol | 30.39 | 67.07 |
| Solyc09g011210.2.1 | Tomato | plastid | 37.02 | 50.76 |
| Bra003841.1-P | Field mustard | cytosol, nucleus, plastid | 70.17 | 49.42 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 45.86 | 48.82 |
| Zm00001d026016_P002 | Maize | plastid | 37.57 | 45.33 |
| KXG26990 | Sorghum | plastid | 35.91 | 44.22 |
| KRH09475 | Soybean | plastid | 41.44 | 41.67 |
| PGSC0003DMT400022733 | Potato | plastid | 37.02 | 41.1 |
| VIT_17s0053g00760.t01 | Wine grape | plastid | 34.25 | 38.99 |
| KRH38934 | Soybean | plastid | 33.15 | 38.96 |
| AT3G46020.1 | Thale cress | mitochondrion | 19.89 | 35.29 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 28.18 | 32.69 |
| AT4G13860.1 | Thale cress | cytosol | 15.47 | 32.18 |
| AT2G27330.1 | Thale cress | mitochondrion | 19.34 | 30.17 |
| Os04t0583800-01 | Rice | plastid | 18.78 | 28.81 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 17.68 | 28.32 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 24.86 | 26.95 |
| AT5G06210.1 | Thale cress | mitochondrion | 20.44 | 25.34 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 18.78 | 25.0 |
| AT5G59860.1 | Thale cress | nucleus | 19.89 | 22.93 |
| AT4G13850.1 | Thale cress | mitochondrion | 19.34 | 22.15 |
| AT3G08000.1 | Thale cress | plastid | 17.13 | 21.68 |
| AT1G18630.1 | Thale cress | mitochondrion | 17.13 | 20.0 |
| AT4G39260.1 | Thale cress | nucleus | 17.68 | 18.93 |
| AT2G21660.1 | Thale cress | nucleus | 16.57 | 17.05 |
| AT3G20930.2 | Thale cress | plastid | 25.41 | 12.14 |
| AT3G26420.1 | Thale cress | nucleus | 16.02 | 11.84 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 17.68 | 11.07 |
| AT5G61030.1 | Thale cress | mitochondrion | 16.57 | 9.71 |
| AT1G60650.2 | Thale cress | nucleus | 15.47 | 9.59 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 12.71 | 7.42 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:843687 | ProteinID:AAG30979.1 | ProteinID:AEE35472.1 | ArrayExpress:AT1G73530 |
| EnsemblPlantsGene:AT1G73530 | RefSeq:AT1G73530 | TAIR:AT1G73530 | RefSeq:AT1G73530-TAIR-G | EnsemblPlants:AT1G73530.1 | TAIR:AT1G73530.1 |
| EMBL:BT021981 | EMBL:BT028910 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0016554 | GO:GO:1900871 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_177494.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR45502 | UniProt:Q9FX45 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI00000A8430 | SEG:seg |
Description
ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
Coordinates
chr1:-:27643609..27645525
Molecular Weight (calculated)
20064.2 Da
IEP (calculated)
10.662
GRAVY (calculated)
-0.318
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.