Factsheet for AT5G59865.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31588	Canola	nucleus	53.1	76.92
VIT_05s0094g00380.t01	Wine grape	mitochondrion	46.9	48.18
GSMUA_Achr2P19090_001	Banana	mitochondrion	45.13	48.11
CDX71070	Canola	mitochondrion	63.72	47.37
TraesCS3D01G539400.1	Wheat	mitochondrion	42.48	44.04
TraesCS3B01G610900.1	Wheat	mitochondrion	42.48	44.04
TraesCS3A01G534200.1	Wheat	mitochondrion	42.48	44.04
TraesCS1A01G405700.1	Wheat	mitochondrion	42.48	43.24
Os01t0974701-01	Rice	mitochondrion	44.25	43.1
KRH24829	Soybean	mitochondrion	51.33	39.73
HORVU3Hr1G116710.1	Barley	mitochondrion	42.48	39.34
Zm00001d041949_P001	Maize	mitochondrion	37.17	38.89
KRH24832	Soybean	endoplasmic reticulum	45.13	36.17
EES02151	Sorghum	mitochondrion, plastid	44.25	34.25
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	43.36	32.89
AT3G46020.1	Thale cress	mitochondrion	28.32	31.37
AT4G13860.1	Thale cress	cytosol	21.24	27.59
AT3G23830.1	Thale cress	mitochondrion, plastid	30.97	25.74
AT3G08000.1	Thale cress	plastid	31.86	25.17
KRH40931	Soybean	mitochondrion	51.33	25.11
AT5G06210.1	Thale cress	mitochondrion	30.09	23.29
AT2G27330.1	Thale cress	mitochondrion	23.89	23.28
AT1G18630.1	Thale cress	mitochondrion	30.09	21.94
AT5G54580.1	Thale cress	mitochondrion, plastid	29.2	21.15
AT4G13850.1	Thale cress	mitochondrion	29.2	20.89
AT2G37510.2	Thale cress	mitochondrion, plastid	27.43	18.56
AT4G39260.1	Thale cress	nucleus	27.43	18.34
AT1G73530.1	Thale cress	plastid	28.32	17.68
AT2G21660.1	Thale cress	nucleus	27.43	17.61
AT5G59860.1	Thale cress	nucleus	21.24	15.29
AT3G26420.1	Thale cress	nucleus	29.2	13.47
AT1G74230.1	Thale cress	mitochondrion, plastid	31.86	12.46
AT5G61030.1	Thale cress	mitochondrion	30.09	11.0
AT3G20930.2	Thale cress	plastid	31.86	9.5
AT1G60650.2	Thale cress	nucleus	22.12	8.56
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	18.58	6.77

Protein Annotations

EntrezGene:28721278	Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A178ULY3	UniProt:A0A1P8BEY1	ProteinID:ANM70168.1
ArrayExpress:AT5G59865	EnsemblPlantsGene:AT5G59865	EnsemblPlants:AT5G59865.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_001331799.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAO94819.1
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI0007DEC15C	SEG:seg	:

Description

Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]

Coordinates

chr5:-:24114599..24115349

Molecular Weight (calculated)

12640.1 Da

IEP (calculated)

8.309

GRAVY (calculated)

-0.264

Length

113 amino acids

Sequence
(BLAST)

001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.