Factsheet for GSMUA_Achr3P22540_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	61.95	66.49
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	51.71	63.1
KRH42209	Soybean	endoplasmic reticulum	39.51	46.02
PGSC0003DMT400076497	Potato	nucleus	41.46	41.46
KRH58335	Soybean	nucleus	40.0	39.42
PGSC0003DMT400045627	Potato	nucleus	40.49	38.78
Solyc01g104840.2.1	Tomato	nucleus	41.46	38.12
GSMUA_Achr7P27650_001	Banana	nucleus	23.9	36.84
Solyc10g047130.1.1	Tomato	nucleus	41.95	35.98
Bra025205.1-P	Field mustard	nucleus	39.02	34.48
CDY13632	Canola	nucleus	40.0	34.31
CDX83617	Canola	nucleus	38.54	34.05
GSMUA_Achr8P05200_001	Banana	cytosol	25.37	33.55
AT3G26420.1	Thale cress	nucleus	39.02	32.65
GSMUA_Achr4P14550_001	Banana	nucleus	24.88	32.28
CDY52166	Canola	nucleus	38.05	32.1
CDY48990	Canola	nucleus	38.05	32.1
Bra032933.1-P	Field mustard	nucleus	38.05	32.1
GSMUA_Achr11P...	Banana	mitochondrion	16.59	31.48
VIT_18s0166g00180.t01	Wine grape	mitochondrion	43.41	31.23
GSMUA_Achr3P30570_001	Banana	plasma membrane	25.37	30.59
GSMUA_Achr7P02750_001	Banana	mitochondrion	21.46	29.33
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	16.1	28.7
GSMUA_Achr2P19090_001	Banana	mitochondrion	14.15	27.36
GSMUA_Achr6P34250_001	Banana	mitochondrion	14.15	26.36
GSMUA_Achr8P07380_001	Banana	mitochondrion	17.07	25.93
GSMUA_Achr11P...	Banana	mitochondrion	16.59	25.76
GSMUA_Achr6P35640_001	Banana	nucleus	17.07	25.18
GSMUA_Achr4P16080_001	Banana	mitochondrion	21.95	23.68
GSMUA_Achr2P12550_001	Banana	nucleus	22.44	20.54
GSMUA_Achr6P15340_001	Banana	plastid	17.56	20.45
GSMUA_Achr5P15860_001	Banana	plastid	16.1	19.41
GSMUA_Achr9P07090_001	Banana	mitochondrion	20.98	18.07
GSMUA_Achr4P03230_001	Banana	mitochondrion	21.95	17.58
GSMUA_Achr4P22370_001	Banana	nucleus	24.88	16.4
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	26.34	15.65
GSMUA_Achr2P01230_001	Banana	nucleus	15.61	10.26

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr3G22540_001	EnsemblPlants:GSMUA_Achr3P22540_001	EnsemblPlants:GSMUA_Achr3T22540_001
InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SGX0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix
UniParc:UPI0002966A37	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G22540_001]

Coordinates

chr3:-:23477364..23482365

Molecular Weight (calculated)

21653.4 Da

IEP (calculated)

4.196

GRAVY (calculated)

0.513

Length

205 amino acids

Sequence
(BLAST)

001: MSEPEEYCCF IGSLSWSTTD GGLKDAFHKF GHLVEAKVVV DKFSGRSRGF GFVTFDDKNA MEDAIEAMNG MDLDGRSITV ERAQPQGPGS RDRDVGLVTA
101: LNVAILVTLL GNALLVMVHE GIGMAVGRTD MGVVVAVIAD MDLTGMGIVS LIGTEMGEAV GVLEVIVIIV NALVHMNALV EVAVAIDLDP VAAAVTAVEL
201: VYHYN

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.