Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P05200_001 | Banana | cytosol | 83.46 | 71.61 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 88.72 | 69.41 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 80.45 | 67.72 |
| CDY46213 | Canola | nucleus | 60.9 | 66.39 |
| KRH29453 | Soybean | nucleus | 69.17 | 65.71 |
| CDY41969 | Canola | cytosol | 63.16 | 65.62 |
| Solyc10g051380.1.1 | Tomato | nucleus | 63.91 | 65.38 |
| KRH29452 | Soybean | nucleus | 75.94 | 64.74 |
| Solyc10g051390.1.1 | Tomato | nucleus | 57.14 | 64.41 |
| Os12t0632000-01 | Rice | nucleus | 76.69 | 62.96 |
| KRH29451 | Soybean | nucleus | 80.45 | 62.57 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 75.94 | 62.35 |
| Zm00001d041246_P001 | Maize | nucleus | 66.92 | 61.38 |
| Bra030284.1-P | Field mustard | nucleus | 77.44 | 61.31 |
| KRH29454 | Soybean | nucleus | 78.2 | 61.18 |
| CDY15876 | Canola | nucleus | 77.44 | 60.95 |
| CDY72366 | Canola | nucleus | 78.2 | 60.82 |
| Zm00001d031168_P001 | Maize | plastid | 69.92 | 60.0 |
| PGSC0003DMT400083014 | Potato | nucleus | 72.93 | 58.43 |
| PGSC0003DMT400084258 | Potato | nucleus | 72.93 | 58.43 |
| PGSC0003DMT400084290 | Potato | nucleus | 72.93 | 58.43 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 67.67 | 58.06 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 69.17 | 57.86 |
| Solyc01g109660.2.1 | Tomato | extracellular | 75.94 | 57.71 |
| CDY59763 | Canola | nucleus | 72.18 | 57.48 |
| PGSC0003DMT400001879 | Potato | cytosol | 75.94 | 57.39 |
| Bra001972.1-P | Field mustard | nucleus | 70.68 | 57.32 |
| EES16438 | Sorghum | nucleus | 70.68 | 56.97 |
| KRH51528 | Soybean | nucleus | 77.44 | 56.59 |
| CDY70933 | Canola | nucleus | 71.43 | 56.55 |
| Bra031210.1-P | Field mustard | nucleus | 71.43 | 56.55 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 69.17 | 56.44 |
| Bra010693.1-P | Field mustard | nucleus | 69.92 | 56.36 |
| CDX90323 | Canola | plastid | 69.92 | 56.36 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 70.68 | 56.29 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 68.42 | 56.17 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 68.42 | 56.17 |
| AT2G21660.1 | Thale cress | nucleus | 73.68 | 55.68 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 67.67 | 55.56 |
| TraesCS4A01G293000.1 | Wheat | plastid | 67.67 | 55.56 |
| CDY42616 | Canola | cytosol | 65.41 | 55.41 |
| CDY12133 | Canola | cytosol | 65.41 | 55.06 |
| AT4G39260.1 | Thale cress | nucleus | 69.92 | 55.03 |
| KXG37870 | Sorghum | nucleus | 69.92 | 54.71 |
| CDX71276 | Canola | nucleus | 70.68 | 54.65 |
| KRH60842 | Soybean | mitochondrion | 75.94 | 54.59 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 67.67 | 54.22 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 69.17 | 54.12 |
| PGSC0003DMT400084266 | Potato | extracellular | 65.41 | 54.04 |
| TraesCS5D01G020900.1 | Wheat | plastid | 69.17 | 52.87 |
| Bra011869.1-P | Field mustard | cytosol | 63.91 | 52.47 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 34.59 | 46.46 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 60.15 | 46.24 |
| Os03t0670700-01 | Rice | nucleus | 67.67 | 45.92 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 37.59 | 33.33 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 24.06 | 30.19 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 36.09 | 28.57 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 39.1 | 27.37 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 22.56 | 26.09 |
| GSMUA_Achr11P... | Banana | mitochondrion | 21.05 | 25.93 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 27.07 | 25.9 |
| GSMUA_Achr11P... | Banana | mitochondrion | 25.56 | 25.76 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 45.86 | 25.63 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 21.05 | 25.45 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 41.35 | 24.55 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 34.59 | 24.08 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 36.84 | 23.9 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 45.86 | 23.83 |
| GSMUA_Achr8P07380_001 | Banana | mitochondrion | 22.56 | 22.22 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 29.32 | 22.16 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 47.37 | 20.26 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 24.06 | 18.82 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 45.86 | 17.68 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 25.56 | 10.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P27650_001 | EnsemblPlants:GSMUA_Achr7T27650_001 | EnsemblPlantsGene:GSMUA_Achr7G27650_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45429 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000296DE6C | UniProt:M0TLA1 | MapMan:16.7.2 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_63.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G27650_001]
Coordinates
chr7:-:28599128..28599999
Molecular Weight (calculated)
14142.1 Da
IEP (calculated)
4.933
GRAVY (calculated)
-0.798
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDVEYRC FVGGLAWSTD DVSLERAFSA YGEIVDSKII NDRETGRSRG FGFVTFRDEQ SMRDAIEGMN GQILDGRSIT VNEAQNRRNG GGGGGFRSGG
101: GGGYGGGGYG RERGYGDGGS RFSRGGDDGN WRN
101: GGGYGGGGYG RERGYGDGGS RFSRGGDDGN WRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.