Factsheet for GSMUA_Achr2P08030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09160_001
GSMUA_Achr2P08030_001
GSMUA_Achr2P16160_001
GSMUA_Achr3P02960_001
GSMUA_Achr3P20980_001
GSMUA_Achr3P26270_001
GSMUA_Achr5P29190_001
GSMUA_Achr6P25350_001
GSMUA_Achr6P34320_001
GSMUA_Achr7P10410_001
GSMUA_Achr7P18630_001
GSMUA_Achr7P24000_001
GSMUA_Achr8P02660_001
GSMUA_Achr8P05700_001
GSMUA_Achr8P16150_001
GSMUA_Achr9P03170_001
GSMUA_Achr9P08850_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	GSMUA_Achr3P26270_001	AT1G72770.1	19033529
AT1G49240.1	GSMUA_Achr7P24000_001	AT1G72770.1	19033529
AT1G49240.1	GSMUA_Achr8P05700_001	AT1G72770.1	19033529
AT5G09810.1	GSMUA_Achr1P09160_001	AT2G31200.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT2G37620.1	21798944
AT5G09810.1	GSMUA_Achr7P18630_001	AT2G37620.1	21798944
AT5G09810.1	GSMUA_AchrUn_...	AT2G37620.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT3G12110.1	21798944
AT5G09810.1	GSMUA_Achr7P18630_001	AT3G12110.1	21798944
AT5G09810.1	GSMUA_AchrUn_...	AT3G12110.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT3G18060.1	21798944
AT5G09810.1	GSMUA_Achr3P20980_001	AT3G18060.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr11P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr11P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr2P08030_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr2P16160_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr3P02960_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr5P29190_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr6P25350_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr6P34320_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr7P10410_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr8P02660_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr8P16150_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr9P03170_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr9P08850_001	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076499	Potato	cytosol	44.29	80.31
GSMUA_Achr10P...	Banana	cytosol	75.43	80.24
CDX85794	Canola	cytosol	79.43	78.75
CDY40061	Canola	cytosol	79.43	78.75
GSMUA_Achr6P25350_001	Banana	cytosol	84.57	78.51
CDY31972	Canola	cytosol	79.14	78.47
CDY30296	Canola	cytosol	79.14	78.47
GSMUA_Achr8P16150_001	Banana	cytosol	84.29	78.25
GSMUA_Achr3P02960_001	Banana	cytosol	84.29	78.25
GSMUA_Achr9P03170_001	Banana	cytosol	84.0	78.19
Bra009081.1-P	Field mustard	cytosol	78.86	78.19
VIT_12s0178g00200.t01	Wine grape	cytosol	84.0	77.98
GSMUA_Achr9P08850_001	Banana	cytosol	77.71	77.94
TraesCS1D01G020000.1	Wheat	cytosol	83.71	77.72
TraesCS1B01G024500.1	Wheat	golgi, nucleus	83.71	77.72
GSMUA_Achr1P05990_001	Banana	plasma membrane	83.71	77.72
AT5G09810.1	Thale cress	cytosol	83.71	77.72
GSMUA_Achr11P...	Banana	cytosol	77.43	77.65
GSMUA_Achr5P29190_001	Banana	cytosol	77.14	77.59
Zm00001d019635_P001	Maize	cytosol	30.57	77.54
CDY21607	Canola	cytosol	83.43	77.45
Solyc03g078400.2.1	Tomato	nucleus, plastid	83.43	77.45
PGSC0003DMT400047481	Potato	cytosol	83.43	77.45
KRH59535	Soybean	cytosol	83.43	77.45
KRH43389	Soybean	cytosol	83.43	77.45
Bra028615.1-P	Field mustard	cytosol	83.43	77.45
CDX69885	Canola	cytosol	83.43	77.45
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	73.43	77.41
CDY56544	Canola	cytosol	83.14	77.19
Solyc11g005330.1.1	Tomato	nucleus	83.14	77.19
GSMUA_Achr10P...	Banana	cytosol	83.14	77.19
PGSC0003DMT400010174	Potato	cytosol	83.14	77.19
KXG21029	Sorghum	cytosol	83.14	77.19
GSMUA_Achr2P16160_001	Banana	cytosol	83.14	77.19
CDX81140	Canola	cytosol	83.14	77.19
Solyc01g104770.2.1	Tomato	nucleus	83.14	77.19
KRH64098	Soybean	cytosol	83.14	77.19
GSMUA_Achr8P02660_001	Banana	cytosol	82.86	76.92
GSMUA_AchrUn_...	Banana	plasma membrane	82.86	76.92
Bra006033.1-P	Field mustard	cytosol	82.86	76.92
GSMUA_Achr7P10410_001	Banana	cytosol	82.57	76.66
GSMUA_Achr1P20200_001	Banana	cytosol	75.71	76.37
GSMUA_Achr3P20240_001	Banana	cytosol	65.43	76.33
GSMUA_Achr6P34320_001	Banana	cytosol	53.14	76.23
GSMUA_Achr11P...	Banana	cytosol	82.0	76.13
GSMUA_Achr4P31250_001	Banana	cytosol	82.0	76.13
GSMUA_Achr2P15150_001	Banana	cytosol	75.14	75.36
GSMUA_Achr10P...	Banana	cytosol	59.14	75.27
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.86	75.07
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.57	74.8
Zm00001d016605_P001	Maize	cytosol	33.71	74.68
GSMUA_Achr6P02480_001	Banana	cytosol	62.86	74.07
AT1G49240.1	Thale cress	cytosol	79.71	74.01
CDX82326	Canola	cytosol	79.71	74.01
CDY18545	Canola	cytosol	79.43	73.74
CDX92272	Canola	cytosol	79.43	73.74
CDX95498	Canola	cytosol	79.43	73.74
CDY61982	Canola	cytosol	79.43	73.74
AT3G18780.3	Thale cress	cytosol	79.43	73.74
Solyc04g071260.2.1	Tomato	plastid	79.14	73.47
Bra022356.1-P	Field mustard	cytosol	67.14	72.76
CDX99315	Canola	cytosol	67.14	72.76
CDX92271	Canola	cytosol	65.71	72.56
HORVU1Hr1G002840.6	Barley	plasma membrane	84.0	72.24
TraesCS1A01G020500.2	Wheat	cytosol	84.0	72.24
GSMUA_Achr7P18630_001	Banana	cytosol	65.43	71.56
GSMUA_Achr10P...	Banana	cytosol	53.43	71.1
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	70.0	69.41
PGSC0003DMT400076501	Potato	cytosol	38.29	67.0
KXG21030	Sorghum	cytosol	74.0	66.58
Zm00001d003298_P001	Maize	cytosol	48.86	65.02
VIT_04s0044g00580.t01	Wine grape	extracellular	83.71	63.7
Zm00001d004087_P001	Maize	cytosol	38.86	62.96
PGSC0003DMT400087294	Potato	mitochondrion	48.86	62.41
Os01t0866100-01	Rice	plasma membrane	34.57	59.61
PGSC0003DMT400022210	Potato	cytosol	61.71	58.7
PGSC0003DMT400088088	Potato	cytosol	32.29	58.25
PGSC0003DMT400022205	Potato	cytosol	58.57	56.01
PGSC0003DMT400074882	Potato	cytosol	58.57	55.41
PGSC0003DMT400074887	Potato	cytosol	56.0	52.97
GSMUA_AchrUn_...	Banana	cytosol	46.29	41.65
GSMUA_Achr2P05970_001	Banana	cytosol	17.71	35.03
GSMUA_Achr8P01270_001	Banana	cytosol	40.29	33.02
GSMUA_Achr9P07630_001	Banana	cytosol	40.0	32.71
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	44.0	32.56
GSMUA_Achr6P21120_001	Banana	cytosol	39.14	32.08
Zm00001d034421_P004	Maize	plastid	40.86	30.56
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	24.57	29.55
GSMUA_Achr2P05960_001	Banana	cytosol	23.43	26.8
GSMUA_AchrUn_...	Banana	cytosol	32.86	26.44

Protein Annotations

EnsemblPlants:GSMUA_Achr2P08030_001	EnsemblPlants:GSMUA_Achr2T08030_001	EnsemblPlantsGene:GSMUA_Achr2G08030_001	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin
InterPro:Actin/actin-like_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS01132
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002948736	UniProt:M0S644	MapMan:20.2.1	:

Description

Actin [Source:GMGC_GENE;Acc:GSMUA_Achr2G08030_001]

Coordinates

chr2:+:12200975..12202421

Molecular Weight (calculated)

38693.1 Da

IEP (calculated)

5.134

GRAVY (calculated)

-0.201

Length

350 amino acids

Sequence
(BLAST)

001: MDTDGLTIVC DNGTGMVKAG FAGDDAPRSV FPSIVGQPRH TSVMIGMNNK NIYIGSEAQS KRGMLTLSYP IEHGIVNNWD NMEKIWHHTF HNELRVAPEE
101: HPVLLTEAPL NPKANREKMT EIMFDTFDVP AMYVAIQAVL SLYASGRTTG IVLDSGDGVS HAVPIYEGYA LPHAISRVNL AGRHLTDALM TILTERGYSF
201: TTTAEREIVR DIKEKLAYVA LDYANELEEA NSSSVLEKSY ELPDGQVITI GAERFRCPEC DVDIRRDLYG SIVLSGGTSL FPGIDDRMTK EVSALAPKSM
301: KIKVVAPPER KYSVWIGGSV LASISSFEQS WISKEEYQED GPSIVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.