Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr7P18630_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31200.1 | GSMUA_Achr10P... | AT3G12110.1 | 21798944 |
| AT2G31200.1 | GSMUA_Achr7P18630_001 | AT3G12110.1 | 21798944 |
| AT2G31200.1 | GSMUA_AchrUn_... | AT3G12110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0049g00980.t01 | Wine grape | cytosol | 64.62 | 88.11 |
| KRH51874 | Soybean | cytosol | 51.79 | 86.32 |
| VIT_07s0005g03310.t01 | Wine grape | cytosol | 62.05 | 84.62 |
| KRH34385 | Soybean | cytosol | 63.59 | 83.78 |
| GSMUA_Achr5P24750_001 | Banana | cytosol | 47.18 | 82.88 |
| PGSC0003DMT400044218 | Potato | cytosol | 61.03 | 82.07 |
| Solyc09g090110.2.1 | Tomato | cytosol | 61.03 | 82.07 |
| KRG92420 | Soybean | cytosol | 62.05 | 81.76 |
| KRH67374 | Soybean | cytosol | 60.0 | 80.14 |
| KRG95660 | Soybean | cytosol | 59.49 | 79.45 |
| GSMUA_Achr2P17320_001 | Banana | cytosol | 58.97 | 79.31 |
| GSMUA_Achr7P00900_001 | Banana | cytosol | 53.33 | 78.79 |
| Solyc09g072590.2.1 | Tomato | cytosol | 58.46 | 78.62 |
| Solyc09g072600.1.1 | Tomato | cytosol | 19.49 | 77.55 |
| GSMUA_Achr2P13120_001 | Banana | cytosol | 56.92 | 76.55 |
| GSMUA_Achr7P16650_001 | Banana | cytosol | 37.44 | 76.04 |
| AT2G31200.1 | Thale cress | cytosol | 56.92 | 76.03 |
| Bra018268.1-P | Field mustard | mitochondrion | 56.41 | 75.34 |
| CDY10786 | Canola | cytosol | 56.41 | 75.34 |
| CDY24750 | Canola | cytosol | 55.38 | 73.97 |
| GSMUA_Achr6P15320_001 | Banana | cytosol | 45.13 | 66.67 |
| PGSC0003DMT400026656 | Potato | mitochondrion | 61.54 | 66.3 |
| GSMUA_Achr10P... | Banana | cytosol | 44.62 | 65.91 |
| GSMUA_Achr4P29400_001 | Banana | cytosol | 31.28 | 62.24 |
| GSMUA_Achr8P11370_001 | Banana | cytosol | 35.38 | 62.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.05 | 62.12 |
| GSMUA_Achr11P... | Banana | cytosol | 41.03 | 60.61 |
| GSMUA_Achr6P33310_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 50.77 | 59.64 |
| GSMUA_Achr11P... | Banana | cytosol | 40.0 | 59.09 |
| GSMUA_Achr1P00290_001 | Banana | cytosol | 39.49 | 58.33 |
| GSMUA_Achr9P04050_001 | Banana | endoplasmic reticulum, extracellular | 49.23 | 57.83 |
| GSMUA_Achr5P18890_001 | Banana | cytosol, plastid | 42.05 | 57.34 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 41.54 | 56.64 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 50.77 | 53.51 |
| GSMUA_AchrUn_... | Banana | extracellular | 22.05 | 49.43 |
| GSMUA_Achr11P... | Banana | cytosol | 41.54 | 47.93 |
| GSMUA_Achr6P15330_001 | Banana | cytosol, plastid | 22.05 | 47.78 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 49.23 | 44.24 |
| GSMUA_Achr5P12270_001 | Banana | plastid, vacuole | 44.62 | 43.28 |
| GSMUA_Achr2P11510_001 | Banana | cytosol | 43.59 | 37.28 |
| GSMUA_Achr2P18590_001 | Banana | cytosol | 43.08 | 37.0 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 50.77 | 35.61 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 |
| EnsemblPlantsGene:GSMUA_Achr1G09160_001 | EnsemblPlants:GSMUA_Achr1P09160_001 | EnsemblPlants:GSMUA_Achr1T09160_001 | InterPro:IPR002108 | InterPro:IPR029006 | UniProt:M0RYC5 |
| PFAM:PF00241 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF20 | SMART:SM00102 | SUPFAM:SSF55753 |
| UniParc:UPI0002962FAD | SEG:seg | : | : | : | : |
Description
Actin-depolymerizing factor [Source:GMGC_GENE;Acc:GSMUA_Achr1G09160_001]
Coordinates
chr1:-:7016000..7020388
Molecular Weight (calculated)
22374.4 Da
IEP (calculated)
7.569
GRAVY (calculated)
-0.569
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQPFDLVR QNSHFPFSST TSNIIASPPS FPSTIPPVSL LTPLRLSRDR GAMSFRTSNA SSGMGVDEHS KSTFLELQRK KVHRYVIFKI DEKKKEVVVE
101: KTGAPGESYD DFTAALPEND CRYAIYDFDY VTEDNCQKSK IFFIAWSPSI SRIRAKMLYA TSKDRFRREL DGIHYEIQAT DPTEMELEVL RDRAS
101: KTGAPGESYD DFTAALPEND CRYAIYDFDY VTEDNCQKSK IFFIAWSPSI SRIRAKMLYA TSKDRFRREL DGIHYEIQAT DPTEMELEVL RDRAS
001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN
Arabidopsis Description
ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.