Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31200.1 | CDY01102 | AT3G12110.1 | 21798944 |
| AT2G31200.1 | CDY08455 | AT3G12110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10786 | Canola | cytosol | 97.26 | 97.26 |
| Bra018268.1-P | Field mustard | mitochondrion | 96.58 | 96.58 |
| AT2G31200.1 | Thale cress | cytosol | 83.56 | 83.56 |
| VIT_07s0005g03310.t01 | Wine grape | cytosol | 79.45 | 81.12 |
| KRH67374 | Soybean | cytosol | 78.08 | 78.08 |
| KRG95660 | Soybean | cytosol | 76.03 | 76.03 |
| Os03t0780400-01 | Rice | plastid | 70.55 | 71.03 |
| TraesCS5D01G423800.1 | Wheat | golgi | 69.86 | 70.34 |
| Os12t0628100-01 | Rice | extracellular | 69.86 | 70.34 |
| EER90794 | Sorghum | cytosol | 69.86 | 70.34 |
| Zm00001d034326_P001 | Maize | cytosol | 63.01 | 69.7 |
| Zm00001d013141_P001 | Maize | cytosol | 69.18 | 69.66 |
| TraesCS5A01G416100.1 | Wheat | cytosol | 69.18 | 69.66 |
| Solyc09g072600.1.1 | Tomato | cytosol | 22.6 | 67.35 |
| CDY31586 | Canola | cytosol | 59.59 | 65.91 |
| CDX94438 | Canola | cytosol | 56.85 | 64.34 |
| CDY52365 | Canola | cytosol | 56.85 | 64.34 |
| CDX89411 | Canola | cytosol | 56.16 | 63.57 |
| CDY31909 | Canola | cytosol | 56.16 | 63.08 |
| CDX71067 | Canola | cytosol | 56.85 | 62.88 |
| CDX90057 | Canola | cytosol | 54.79 | 60.15 |
| PGSC0003DMT400026656 | Potato | mitochondrion | 73.97 | 59.67 |
| CDY54088 | Canola | cytosol | 39.04 | 58.76 |
| CDX88730 | Canola | cytosol | 60.96 | 57.79 |
| CDY32581 | Canola | cytosol | 21.23 | 57.41 |
| TraesCS1B01G197600.1 | Wheat | cytosol | 58.9 | 57.33 |
| CDX75477 | Canola | cytosol | 47.26 | 57.02 |
| TraesCS1D01G186600.1 | Wheat | cytosol | 58.9 | 56.95 |
| CDY09242 | Canola | cytosol | 58.9 | 56.21 |
| CDY40654 | Canola | cytosol | 47.26 | 56.1 |
| CDY72027 | Canola | cytosol | 41.1 | 56.07 |
| GSMUA_Achr1P09160_001 | Banana | cytosol | 73.97 | 55.38 |
| CDY15154 | Canola | cytosol | 56.85 | 55.33 |
| CDX89737 | Canola | cytosol | 54.11 | 55.24 |
| Os10t0521100-01 | Rice | cytosol | 56.85 | 54.97 |
| CDX71068 | Canola | cytosol | 61.64 | 54.88 |
| TraesCS1A01G183100.2 | Wheat | cytosol | 58.22 | 54.84 |
| CDY02247 | Canola | cytosol | 53.42 | 54.55 |
| HORVU1Hr1G048450.4 | Barley | cytosol | 58.9 | 54.43 |
| CDY02249 | Canola | cytosol | 23.97 | 53.85 |
| CDX99133 | Canola | cytosol, plastid | 60.96 | 53.29 |
| CDX86048 | Canola | cytosol, plastid | 60.27 | 52.69 |
| CDX69101 | Canola | cytosol | 50.68 | 52.11 |
| CDX72508 | Canola | cytosol | 48.63 | 51.82 |
| HORVU5Hr1G100770.1 | Barley | cytosol, plastid | 69.86 | 51.0 |
| CDX92721 | Canola | mitochondrion | 58.22 | 47.49 |
| CDY38025 | Canola | cytosol | 56.85 | 47.16 |
| KXG39048 | Sorghum | plastid | 56.85 | 43.92 |
| CDX88731 | Canola | cytosol, plastid | 59.59 | 43.72 |
| CDY50194 | Canola | cytosol | 58.22 | 39.91 |
| Zm00001d034024_P001 | Maize | cytosol, plastid | 41.1 | 38.96 |
| Zm00001d029656_P003 | Maize | cytosol | 54.79 | 38.1 |
| CDX80216 | Canola | cytosol | 62.33 | 36.11 |
| CDY07204 | Canola | cytosol | 56.85 | 30.63 |
| Os07t0297500-00 | Rice | cytosol | 41.1 | 25.86 |
| CDY51146 | Canola | cytosol, mitochondrion | 57.53 | 23.86 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | GO:A0A078GDX2 | UniProt:A0A078GDX2 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf |
| InterPro:ADF/Cofilin | EnsemblPlants:CDY24750 | ProteinID:CDY24750 | ProteinID:CDY24750.1 | GO:GO:0003674 | GO:GO:0003779 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 | EnsemblPlantsGene:GSBRNA2T00027164001 |
| InterPro:IPR002108 | InterPro:IPR029006 | PFAM:PF00241 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF20 |
| SMART:SM00102 | SUPFAM:SSF55753 | UniParc:UPI0004EB14DA | : | : | : |
Description
BnaC04g13550DBnaC04g13550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDX2]
Coordinates
chrLK032163:-:331737..333085
Molecular Weight (calculated)
16940.9 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.711
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRGLRKPN ATSGMGVADQ SKTTYHELQR KKTHRYVVFK IDELKNQVVV EKTGNPAESY DDFLASLPDN DCRYAVYDFD FVTAENCQKS KIFFVAWSPD
101: TSRVRAKMVY ATSKERFRRE LQGIHYEIQA TDPTEVDLDV LRERAD
101: TSRVRAKMVY ATSKERFRRE LQGIHYEIQA TDPTEVDLDV LRERAD
001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN
Arabidopsis Description
ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.