CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037352.1-P	Field mustard	cytosol	79.26	99.29
CDY07204	Canola	cytosol	69.03	89.67
AT4G00680.2	Thale cress	cytosol, extracellular	35.51	83.33
CDX90057	Canola	cytosol	31.25	82.71
CDY15154	Canola	cytosol	33.81	79.33
CDY32581	Canola	cytosol	11.93	77.78
CDX94438	Canola	cytosol	28.41	77.52
CDY52365	Canola	cytosol	27.84	75.97
CDX89411	Canola	cytosol	27.84	75.97
CDY31909	Canola	cytosol	27.84	75.38
CDY38025	Canola	cytosol	34.94	69.89
CDY54088	Canola	cytosol	18.75	68.04
CDY31586	Canola	cytosol	25.28	67.42
CDX71067	Canola	cytosol	25.0	66.67
CDX88730	Canola	cytosol	28.41	64.94
CDY72027	Canola	cytosol	19.03	62.62
CDY09242	Canola	cytosol	26.7	61.44
CDX71068	Canola	cytosol	28.41	60.98
CDX99133	Canola	cytosol, plastid	27.84	58.68
CDX92721	Canola	mitochondrion	29.55	58.1
CDX86048	Canola	cytosol, plastid	27.56	58.08
CDY24750	Canola	cytosol	23.86	57.53
CDY10786	Canola	cytosol	23.58	56.85
CDX75477	Canola	cytosol	18.18	52.89
CDX72508	Canola	cytosol	20.17	51.82
CDX89737	Canola	cytosol	21.02	51.75
CDY40654	Canola	cytosol	17.9	51.22
CDY02247	Canola	cytosol	20.45	50.35
CDY50194	Canola	cytosol	29.83	49.3
CDX69101	Canola	cytosol	19.6	48.59
CDY02249	Canola	cytosol	8.81	47.69
CDX88731	Canola	cytosol, plastid	26.42	46.73
CDX80216	Canola	cytosol	26.99	37.7

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	GO:A0A078IMC5	UniProt:A0A078IMC5	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	EnsemblPlants:CDY51146	ProteinID:CDY51146	ProteinID:CDY51146.1	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	EnsemblPlantsGene:GSBRNA2T00098332001
InterPro:IPR002108	InterPro:IPR029006	PFAM:PF00241	PFAM:PF03763	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF30	InterPro:Remorin_C	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0004EDF833	:

Description

BnaA09g51810DBnaA09g51810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMC5]

Coordinates

chrLK032970:+:26742..30085

Molecular Weight (calculated)

40961.3 Da

IEP (calculated)

9.959

GRAVY (calculated)

-0.773

Length

352 amino acids

Sequence
(BLAST)

001: MGFYRPLVQL KLNRFVNQLV LGRIGKPEET NHVRREERGS KLEGKRNKTL VHHVDLNAPM FFRPKLSAHH KANSASGMHV NDECKVKFME LKAKRTYRYI
101: VFKIDEKAQE VQIEKLGNPQ ETYDDFTNSI PENECRYAIY DFDFTTEDNC QKSKIYFIAW SPDTSRVRSK MLYASSKDRF KREMDGIQVE LQATDPSEMS
201: LDIIKERALS SQRIRCLYDC DYLCLRIVRD AMLPQFLVGK AQLSVIKAWK EEKITKVTSK TQKRLHEISG WENKKTRKIE SQLASVQRKM DSEKMEETEK
301: LRSKKAAVHA KAQEKKAKVQ TRRAQEILHA EEEAARLQAT GQIPNKSSCG CF

Best Arabidopsis Sequence Match ( AT4G00680.2 )
(BLAST)

001: MTTCVCVCVV QANSASGMHV NDECKIKFLE LKAKRTYRFI VFKIDEKAQQ VQIEKLGNPE ETYDDFTSSI PDDECRYAVY DFDFTTEDNC QKSKIFFIAW
101: SPDTSRVRSK MLYASSKDRF KREMEGIQVE LQATDPSEMS LDIIKGRLNL

Arabidopsis Description

ADF8actin depolymerizing factor 8 [Source:TAIR;Acc:AT4G00680]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.