Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59880.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G59880.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31586 | Canola | cytosol | 52.38 | 100.0 |
| Bra002522.1-P | Field mustard | cytosol | 54.76 | 99.28 |
| KRH19714 | Soybean | nucleus | 48.81 | 88.49 |
| CDX88730 | Canola | cytosol | 53.57 | 87.66 |
| AT5G59880.1 | Thale cress | cytosol | 48.02 | 87.05 |
| CDX71067 | Canola | cytosol | 45.24 | 86.36 |
| KRH11708 | Soybean | mitochondrion | 46.43 | 84.17 |
| KRH36708 | Soybean | mitochondrion | 46.03 | 83.45 |
| CDX71068 | Canola | cytosol | 53.97 | 82.93 |
| Solyc06g005360.2.1 | Tomato | cytosol, extracellular, nucleus | 44.84 | 82.48 |
| PGSC0003DMT400008913 | Potato | cytosol | 44.84 | 82.48 |
| Os05t0113400-01 | Rice | cytosol, extracellular, plastid | 44.84 | 81.88 |
| GSMUA_Achr10P... | Banana | cytosol | 42.86 | 81.82 |
| EER95084 | Sorghum | cytosol | 44.84 | 81.3 |
| KRH32309 | Soybean | cytosol, nucleus | 46.43 | 81.25 |
| HORVU0Hr1G000200.1 | Barley | cytosol | 44.05 | 79.86 |
| EES17589 | Sorghum | cytosol | 43.65 | 79.14 |
| CDY09242 | Canola | cytosol | 48.02 | 79.08 |
| GSMUA_Achr6P15320_001 | Banana | cytosol | 40.87 | 78.03 |
| CDX94438 | Canola | cytosol | 39.68 | 77.52 |
| CDY52365 | Canola | cytosol | 39.68 | 77.52 |
| CDX89411 | Canola | cytosol | 39.68 | 77.52 |
| Zm00001d035629_P001 | Maize | cytosol | 42.06 | 76.26 |
| Zm00001d035625_P001 | Maize | cytosol | 38.89 | 74.81 |
| CDY31909 | Canola | cytosol | 38.49 | 74.62 |
| CDX99133 | Canola | cytosol, plastid | 48.41 | 73.05 |
| CDX86048 | Canola | cytosol, plastid | 48.02 | 72.46 |
| CDY32581 | Canola | cytosol | 15.48 | 72.22 |
| GSMUA_Achr9P04050_001 | Banana | endoplasmic reticulum, extracellular | 46.83 | 71.08 |
| CDX90057 | Canola | cytosol | 36.9 | 69.92 |
| GSMUA_Achr6P33310_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 46.03 | 69.88 |
| CDY54088 | Canola | cytosol | 25.79 | 67.01 |
| VIT_08s0040g03360.t01 | Wine grape | plastid | 50.0 | 66.67 |
| CDY72027 | Canola | cytosol | 28.17 | 66.36 |
| CDY15154 | Canola | cytosol | 39.29 | 66.0 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 47.62 | 64.86 |
| CDX88731 | Canola | cytosol, plastid | 50.79 | 64.32 |
| CDY24750 | Canola | cytosol | 36.11 | 62.33 |
| CDY10786 | Canola | cytosol | 35.71 | 61.64 |
| VIT_11s0103g00260.t01 | Wine grape | cytosol | 28.17 | 60.17 |
| VIT_10s0092g00330.t01 | Wine grape | cytosol | 21.43 | 59.34 |
| CDX92721 | Canola | mitochondrion | 41.27 | 58.1 |
| CDY38025 | Canola | cytosol | 40.48 | 57.95 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 47.62 | 55.3 |
| CDX75477 | Canola | cytosol | 26.19 | 54.55 |
| CDY40654 | Canola | cytosol | 26.19 | 53.66 |
| CDY02247 | Canola | cytosol | 29.76 | 52.45 |
| CDX89737 | Canola | cytosol | 29.76 | 52.45 |
| CDX69101 | Canola | cytosol | 28.97 | 51.41 |
| CDX72508 | Canola | cytosol | 27.38 | 50.37 |
| CDY50194 | Canola | cytosol | 41.27 | 48.83 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 52.78 | 47.84 |
| CDY02249 | Canola | cytosol | 11.9 | 46.15 |
| CDY07204 | Canola | cytosol | 37.7 | 35.06 |
| CDY51146 | Canola | cytosol, mitochondrion | 37.7 | 26.99 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | GO:A0A078CSS3 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin |
| EnsemblPlants:CDX80216 | ProteinID:CDX80216 | ProteinID:CDX80216.1 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 | EnsemblPlantsGene:GSBRNA2T00133164001 | InterPro:IPR002108 |
| InterPro:IPR029006 | PFAM:PF00241 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF27 | SMART:SM00102 |
| SUPFAM:SSF55753 | UniParc:UPI0004EE7DD8 | : | : | : | : |
Description
BnaC09g35260D
Coordinates
chrLK031820:-:573116..581658
Molecular Weight (calculated)
28209.2 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.474
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIDFGGVRQ PNRSNEPTRT SDDLALPVPS TSFRGLAPTT LRILDAYVIH KSRDLRACLS GSLARFLSRG DVPRFVDQSI GANHNGDQTV QNSSAEVRLP
101: SRTAQDDRAF DSAMANAASG MAVHDDCKLK FLELKAKRTF RFIVYKIEEQ QKQVVVEKLG EPGQSHDDFA ASLPADECRY AVFDFDFVTA ESCQKSKIFF
201: VAWSPDTARV RSKMIYASSK DRFKRELDGI QVELQATDPT EMDLDVFKSR AN
101: SRTAQDDRAF DSAMANAASG MAVHDDCKLK FLELKAKRTF RFIVYKIEEQ QKQVVVEKLG EPGQSHDDFA ASLPADECRY AVFDFDFVTA ESCQKSKIFF
201: VAWSPDTARV RSKMIYASSK DRFKRELDGI QVELQATDPT EMDLDVFKSR AN
001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN
Arabidopsis Description
ADF3Actin-depolymerizing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.