Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59880.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g084660.1.1 | Tomato | cytosol, extracellular | 66.95 | 56.83 |
| PGSC0003DMT400023061 | Potato | cytosol | 66.1 | 56.12 |
| VIT_13s0019g00550.t01 | Wine grape | cytosol | 66.1 | 56.12 |
| PGSC0003DMT400028567 | Potato | cytosol | 65.25 | 55.4 |
| Solyc09g010440.2.1 | Tomato | plastid | 65.25 | 55.4 |
| KRH19714 | Soybean | nucleus | 65.25 | 55.4 |
| VIT_10s0092g00330.t01 | Wine grape | cytosol | 42.37 | 54.95 |
| EER95084 | Sorghum | cytosol | 61.02 | 51.8 |
| AT5G59890.1 | Thale cress | cytosol | 61.02 | 51.8 |
| CDX71067 | Canola | cytosol | 57.63 | 51.52 |
| Bra006686.1-P | Field mustard | cytosol | 57.63 | 51.52 |
| KRH11708 | Soybean | mitochondrion | 60.17 | 51.08 |
| Bra002522.1-P | Field mustard | cytosol | 60.17 | 51.08 |
| GSMUA_Achr10P... | Banana | cytosol | 56.78 | 50.76 |
| KRH36708 | Soybean | mitochondrion | 59.32 | 50.36 |
| GSMUA_Achr6P15320_001 | Banana | cytosol | 55.93 | 50.0 |
| CDY31586 | Canola | cytosol | 55.93 | 50.0 |
| KRH32309 | Soybean | cytosol, nucleus | 61.02 | 50.0 |
| Os05t0113400-01 | Rice | cytosol, extracellular, plastid | 57.63 | 49.28 |
| Bra020277.1-P | Field mustard | cytosol | 60.17 | 47.65 |
| EES17589 | Sorghum | cytosol | 55.93 | 47.48 |
| AT3G46010.2 | Thale cress | cytosol | 60.17 | 47.33 |
| Bra020276.1-P | Field mustard | cytosol | 61.02 | 47.06 |
| Bra006687.1-P | Field mustard | cytosol | 61.02 | 47.06 |
| VIT_06s0004g04280.t01 | Wine grape | cytosol | 66.95 | 47.02 |
| VIT_16s0050g00220.t01 | Wine grape | cytosol | 52.54 | 46.97 |
| HORVU0Hr1G000200.1 | Barley | cytosol | 55.08 | 46.76 |
| CDX88730 | Canola | cytosol | 61.02 | 46.75 |
| Zm00001d035625_P001 | Maize | cytosol | 51.69 | 46.56 |
| CDY09242 | Canola | cytosol | 60.17 | 46.41 |
| Zm00001d035629_P001 | Maize | cytosol | 53.39 | 45.32 |
| GSMUA_Achr6P33310_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.56 | 45.18 |
| AT5G59880.1 | Thale cress | cytosol | 52.54 | 44.6 |
| GSMUA_Achr9P04050_001 | Banana | endoplasmic reticulum, extracellular | 62.71 | 44.58 |
| CDX71068 | Canola | cytosol | 61.02 | 43.9 |
| VIT_08s0040g03360.t01 | Wine grape | plastid | 69.49 | 43.39 |
| AT3G46000.2 | Thale cress | cytosol | 56.78 | 42.95 |
| VIT_05s0049g00980.t01 | Wine grape | cytosol | 50.85 | 41.96 |
| CDX99133 | Canola | cytosol, plastid | 59.32 | 41.92 |
| CDX86048 | Canola | cytosol, plastid | 59.32 | 41.92 |
| Bra038266.1-P | Field mustard | cytosol | 59.32 | 41.92 |
| VIT_07s0005g03310.t01 | Wine grape | cytosol | 50.0 | 41.26 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 62.71 | 40.0 |
| AT3G45990.1 | Thale cress | cytosol | 44.07 | 39.1 |
| CDX88731 | Canola | cytosol, plastid | 61.86 | 36.68 |
| VIT_03s0038g02220.t01 | Wine grape | cytosol | 40.68 | 36.36 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 60.17 | 32.72 |
| CDX80216 | Canola | cytosol | 60.17 | 28.17 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 63.56 | 26.98 |
| VIT_15s0046g03040.t01 | Wine grape | cytosol | 54.24 | 25.0 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin | ProteinID:CCB62270 |
| ProteinID:CCB62270.1 | UniProt:F6I5Q2 | EMBL:FN596751 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 | InterPro:IPR002108 | InterPro:IPR029006 |
| PFAM:PF00241 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF50 | SMART:SM00102 | SUPFAM:SSF55753 |
| TMHMM:TMhelix | UniParc:UPI000210AB30 | ArrayExpress:VIT_11s0103g00260 | EnsemblPlantsGene:VIT_11s0103g00260 | EnsemblPlants:VIT_11s0103g00260.t01 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:15922328..15923061
Molecular Weight (calculated)
13911.1 Da
IEP (calculated)
9.187
GRAVY (calculated)
0.002
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKATSGMVV HDDCKLKFLE LKAKRTYRFV VFKIEEKKKQ VVVEKVGEPT QSYQDFTIDL LVDECRYAVY DFDFVIEKNC QKSRIFFIAW LSFTIFPIST
101: PMRGHLWHTI LALVRPNI
101: PMRGHLWHTI LALVRPNI
001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKVGQPI QTYEEFAACL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDIAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN
Arabidopsis Description
ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.