Factsheet for VIT_16s0050g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P11370_001	Banana	cytosol	75.76	90.09
GSMUA_AchrUn_...	Banana	cytosol	87.88	87.88
GSMUA_Achr11P...	Banana	cytosol	86.36	86.36
GSMUA_Achr1P00290_001	Banana	cytosol	86.36	86.36
GSMUA_Achr11P...	Banana	cytosol	85.61	85.61
EES05762	Sorghum	cytosol	87.88	83.45
Zm00001d051388_P001	Maize	cytosol	87.12	82.73
Zm00001d017516_P001	Maize	cytosol	84.85	80.58
TraesCS6D01G229200.1	Wheat	cytosol	84.09	79.86
TraesCS6A01G247000.1	Wheat	cytosol	84.09	79.86
EES12628	Sorghum	cytosol	81.82	77.7
Os04t0555700-01	Rice	plasma membrane	81.06	76.98
TraesCS6B01G277600.1	Wheat	cytosol	84.09	76.55
TraesCS2B01G429500.1	Wheat	cytosol	79.55	75.54
Solyc01g094400.2.1	Tomato	unclear	75.76	72.99
PGSC0003DMT400000464	Potato	cytosol	75.76	72.99
VIT_13s0019g00550.t01	Wine grape	cytosol	76.52	72.66
PGSC0003DMT400026582	Potato	mitochondrion	73.48	69.78
Solyc10g017550.2.1	Tomato	unclear	72.73	69.06
VIT_06s0004g04280.t01	Wine grape	cytosol	80.3	63.1
VIT_05s0049g00980.t01	Wine grape	cytosol	64.39	59.44
VIT_03s0038g02220.t01	Wine grape	cytosol	59.09	59.09
VIT_07s0005g03310.t01	Wine grape	cytosol	63.64	58.74
VIT_10s0092g00330.t01	Wine grape	cytosol	39.39	57.14
VIT_08s0040g03360.t01	Wine grape	plastid	79.55	55.56
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	84.09	55.22
VIT_11s0103g00260.t01	Wine grape	cytosol	46.97	52.54
GSMUA_Achr2P18590_001	Banana	cytosol	88.64	51.54
GSMUA_Achr2P11510_001	Banana	cytosol	85.61	49.56
VIT_15s0046g03040.t01	Wine grape	cytosol	90.15	46.48

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	ProteinID:CBI22738
ProteinID:CBI22738.3	UniProt:E0CV38	EMBL:FN595243	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF27	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI00015CDE0F	ArrayExpress:VIT_16s0050g00220	EnsemblPlantsGene:VIT_16s0050g00220	EnsemblPlants:VIT_16s0050g00220.t01	unigene:Vvi.20110	:

Description

No Description!

Coordinates

chr16:-:17034688..17035202

Molecular Weight (calculated)

15285.2 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.432

Length

132 amino acids

Sequence
(BLAST)

001: MAVNDECKLK FLELKAKRNH RFIVFKIEEK IQQVVVEKLG SPDESYDAFT SSLPANECRY AVFDFDFTTD ENCQKSKIFF IAWAPDTSRV RSKMLYASSK
101: DRFKRELDGI QVELQATDPS EMSLDIVKSR AL

Best Arabidopsis Sequence Match ( AT4G25590.1 )
(BLAST)

001: MANAASGMAV EDECKLKFLE LKSKRNYRFI IFRIDGQQVV VEKLGNPDET YDDFTASLPA NECRYAVFDF DFITDENCQK SKIFFIAWSP DSSRVRMKMV
101: YASSKDRFKR ELDGIQVELQ ATDPSEMSFD IIKSRAL

Arabidopsis Description

ADF7Actin-depolymerizing factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.