Factsheet for Solyc01g094400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000464	Potato	cytosol	97.81	97.81
Solyc10g017550.2.1	Tomato	unclear	87.59	86.33
GSMUA_Achr8P11370_001	Banana	cytosol	62.77	77.48
VIT_16s0050g00220.t01	Wine grape	cytosol	72.99	75.76
Solyc03g025750.2.1	Tomato	cytosol	74.45	74.45
GSMUA_Achr11P...	Banana	cytosol	71.53	74.24
Solyc06g035980.2.1	Tomato	cytosol	72.99	72.99
GSMUA_AchrUn_...	Banana	cytosol	69.34	71.97
TraesCS2B01G429500.1	Wheat	cytosol	72.99	71.94
TraesCS6D01G229200.1	Wheat	cytosol	72.26	71.22
TraesCS6A01G247000.1	Wheat	cytosol	72.26	71.22
GSMUA_Achr1P00290_001	Banana	cytosol	68.61	71.21
EES12628	Sorghum	cytosol	71.53	70.5
Zm00001d051388_P001	Maize	cytosol	71.53	70.5
Os04t0555700-01	Rice	plasma membrane	71.53	70.5
GSMUA_Achr11P...	Banana	cytosol	67.88	70.45
EES05762	Sorghum	cytosol	70.8	69.78
Zm00001d017516_P001	Maize	cytosol	70.07	69.06
Solyc10g084660.1.1	Tomato	cytosol, extracellular	69.34	68.35
Solyc09g010440.2.1	Tomato	plastid	68.61	67.63
TraesCS6B01G277600.1	Wheat	cytosol	70.8	66.9
Solyc04g011370.2.1	Tomato	extracellular	68.61	65.73
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	64.96	64.96
Solyc01g111380.2.1	Tomato	cytosol, plastid	58.39	55.94
Solyc09g072590.2.1	Tomato	cytosol	58.39	55.17
Solyc09g090110.2.1	Tomato	cytosol	57.66	54.48
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	75.18	51.24
GSMUA_Achr2P11510_001	Banana	cytosol	74.45	44.74
GSMUA_Achr2P18590_001	Banana	cytosol	72.26	43.61
Solyc09g072600.1.1	Tomato	cytosol	15.33	42.86
VIT_15s0046g03040.t01	Wine grape	cytosol	78.83	42.19

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4AZI1	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF30	SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:Solyc01g094400.2	EnsemblPlants:Solyc01g094400.2.1	UniParc:UPI0002768973
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:85901752..85903408

Molecular Weight (calculated)

15639.5 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.437

Length

137 amino acids

Sequence
(BLAST)

001: MANSASGIAV SDECKLKFME LKAKRNHRYI VFKIDGQQVV VEKVGGQAET HDDLANSLPP NECRYAVFDY DFTTNENVQK SKIFFIAWSP ETARVRSKML
101: YASSKDRFRR EFDGVQVELQ ATDPSEMSLD TFICRAL

Best Arabidopsis Sequence Match ( AT5G52360.1 )
(BLAST)

001: MANAASGMAV EDECKLKFLE LKAKRNYRFI IFRIDGQQVV VEKLGSPQEN YDDFTNYLPP NECRYAVYDF DFTTAENIQK SKIFFIAWSP DSSRVRMKMV
101: YASSKDRFKR ELDGIQVELQ ATDPSEMSLD IIKSRAL

Arabidopsis Description

ADF12ADF10 [Source:UniProtKB/TrEMBL;Acc:A0A178UBW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.