Factsheet for Os04t0555700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12628	Sorghum	cytosol	94.96	94.96
GSMUA_Achr11P...	Banana	cytosol	83.45	87.88
TraesCS2B01G429500.1	Wheat	cytosol	87.77	87.77
GSMUA_Achr11P...	Banana	cytosol	82.01	86.36
VIT_16s0050g00220.t01	Wine grape	cytosol	76.98	81.06
Os07t0484200-01	Rice	plasma membrane	73.38	73.38
Os05t0113400-01	Rice	cytosol, extracellular, plastid	72.66	73.19
PGSC0003DMT400000464	Potato	cytosol	70.5	71.53
Solyc01g094400.2.1	Tomato	unclear	70.5	71.53
PGSC0003DMT400026582	Potato	mitochondrion	70.5	70.5
Solyc10g017550.2.1	Tomato	unclear	69.78	69.78
Os03t0820600-01	Rice	cytosol, extracellular, plastid	57.55	57.55
Os12t0628100-01	Rice	extracellular	55.4	53.1
Os03t0243100-01	Rice	cytosol	53.96	52.45
Os03t0780400-01	Rice	plastid	53.96	51.72
Os03t0820500-01	Rice	plastid	55.4	51.33
GSMUA_Achr2P11510_001	Banana	cytosol	83.45	50.88
GSMUA_Achr2P18590_001	Banana	cytosol	82.73	50.66
Os10t0521100-01	Rice	cytosol	50.36	46.36
VIT_15s0046g03040.t01	Wine grape	cytosol	84.17	45.7
Os07t0297500-00	Rice	cytosol	38.13	22.84

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	EntrezGene:4336623	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
EMBL:AK069329	ProteinID:BAF15433.1	ProteinID:BAS90426.1	ProteinID:CAE01864.2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	EnsemblPlantsGene:Os04g0555700	EnsemblPlants:Os04t0555700-01	PFAM:PF00241
PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF31	UniProt:Q7XSN9	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI000021C78F	RefSeq:XP_015637229.1	:	:	:	:

Description

actin depolymerizing factor 6Similar to Actin-depolymerizing factor (ADF). (Os04t0555700-01)

Coordinates

chr4:-:27819155..27820134

Molecular Weight (calculated)

15884.8 Da

IEP (calculated)

5.312

GRAVY (calculated)

-0.481

Length

139 amino acids

Sequence
(BLAST)

001: MANSASGMAV GDECKLKFQE LKSKRSFRFI TFKIDERTQQ VVVDRLGQPG DTYDDFTASM PASECRYAVF DFDFVTDENC QKSKIFFISW SPDTSKVRSK
101: MLYASSKDRF KRELDGIQVE LQATDPSEMS MDIVKARAL

Best Arabidopsis Sequence Match ( AT4G25590.1 )
(BLAST)

001: MANAASGMAV EDECKLKFLE LKSKRNYRFI IFRIDGQQVV VEKLGNPDET YDDFTASLPA NECRYAVFDF DFITDENCQK SKIFFIAWSP DSSRVRMKMV
101: YASSKDRFKR ELDGIQVELQ ATDPSEMSFD IIKSRAL

Arabidopsis Description

ADF7Actin-depolymerizing factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.