Factsheet for Os05t0113400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

extracellular: 18372294
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G59880.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G000200.1	Barley	cytosol	92.75	92.09
EES17589	Sorghum	cytosol	92.75	92.09
Zm00001d035625_P001	Maize	cytosol	84.06	88.55
Zm00001d035629_P001	Maize	cytosol	89.13	88.49
GSMUA_Achr6P15320_001	Banana	cytosol	81.88	85.61
KRH19714	Soybean	nucleus	84.06	83.45
VIT_13s0019g00550.t01	Wine grape	cytosol	84.06	83.45
CDX71067	Canola	cytosol	78.26	81.82
Bra006686.1-P	Field mustard	cytosol	77.54	81.06
CDY31586	Canola	cytosol	77.54	81.06
AT5G59890.1	Thale cress	cytosol	81.16	80.58
Bra002522.1-P	Field mustard	cytosol	81.16	80.58
Solyc09g010440.2.1	Tomato	plastid	81.16	80.58
Solyc10g084660.1.1	Tomato	cytosol, extracellular	81.16	80.58
PGSC0003DMT400071339	Potato	cytosol	83.33	80.42
Solyc04g011370.2.1	Tomato	extracellular	82.61	79.72
PGSC0003DMT400087280	Potato	cytosol	78.26	79.41
KRH32309	Soybean	cytosol, nucleus	82.61	79.17
PGSC0003DMT400028567	Potato	cytosol	79.71	79.14
PGSC0003DMT400023061	Potato	cytosol	79.71	79.14
Bra020277.1-P	Field mustard	cytosol	84.06	77.85
KRH11708	Soybean	mitochondrion	76.81	76.26
Bra006687.1-P	Field mustard	cytosol	84.06	75.82
KRH36708	Soybean	mitochondrion	76.09	75.54
AT5G59880.1	Thale cress	cytosol	76.09	75.54
CDX88730	Canola	cytosol	84.06	75.32
AT3G46010.2	Thale cress	cytosol	80.43	74.0
Bra020276.1-P	Field mustard	cytosol	81.16	73.2
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	72.46	72.99
PGSC0003DMT400008913	Potato	cytosol	72.46	72.99
Os04t0555700-01	Rice	plasma membrane	73.19	72.66
CDY09242	Canola	cytosol	80.43	72.55
VIT_06s0004g04280.t01	Wine grape	cytosol	86.96	71.43
CDX71068	Canola	cytosol	84.06	70.73
AT3G46000.2	Thale cress	cytosol	78.26	69.23
Bra038266.1-P	Field mustard	cytosol	81.16	67.07
CDX99133	Canola	cytosol, plastid	81.16	67.07
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	89.86	67.03
Os07t0484200-01	Rice	plasma membrane	67.39	66.91
CDX86048	Canola	cytosol, plastid	80.43	66.47
VIT_08s0040g03360.t01	Wine grape	plastid	84.06	61.38
AT3G45990.1	Thale cress	cytosol	57.25	59.4
Os03t0780400-01	Rice	plastid	62.32	59.31
VIT_10s0092g00330.t01	Wine grape	cytosol	38.41	58.24
Os12t0628100-01	Rice	extracellular	60.87	57.93
VIT_11s0103g00260.t01	Wine grape	cytosol	49.28	57.63
CDX88731	Canola	cytosol, plastid	81.88	56.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum	86.96	55.3
Os03t0243100-01	Rice	cytosol	56.52	54.55
Os03t0820600-01	Rice	cytosol, extracellular, plastid	53.62	53.24
Os03t0820500-01	Rice	plastid	52.17	48.0
Os10t0521100-01	Rice	cytosol	52.17	47.68
CDX80216	Canola	cytosol	81.88	44.84
GSMUA_Achr2P16220_001	Banana	cytosol	89.86	44.6
Os07t0297500-00	Rice	cytosol	35.51	21.12

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	UniProt:A0A0P0WH75	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
ProteinID:BAS91947.1	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629
GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	EnsemblPlantsGene:Os05g0113400	EnsemblPlants:Os05t0113400-01
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF30	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI0000E12304	SEG:seg	:	:	:	:

Description

actin depolymerizing factor 7Similar to Actin-depolymerizing factor 2 (ADF 2). (Os05t0113400-01)

Coordinates

chr5:+:716295..718798

Molecular Weight (calculated)

15834.9 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.395

Length

138 amino acids

Sequence
(BLAST)

001: ANAASGMAVD DECKLKFLEL KAKRTYRFII YKIDEKKKMV VVEKVGEPVL NYDDFAASLP ANECRYAIFD YDFVTEENCQ KSKIFFIAWS PDTSRVRSKM
101: IYASSKDRFK RELDGIQVEL QATDPTEVGL DVIRGRAN

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.