CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	KRG91803	AT1G35670.1	19130088
AT5G59880.1	KRH34983	AT1G35670.1	19130088
AT5G59880.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32309	Soybean	cytosol, nucleus	95.68	92.36
KRH11708	Soybean	mitochondrion	90.65	90.65
KRH36708	Soybean	mitochondrion	89.93	89.93
CDY31586	Canola	cytosol	83.45	87.88
Bra002522.1-P	Field mustard	cytosol	87.77	87.77
PGSC0003DMT400008913	Potato	cytosol	86.33	87.59
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	86.33	87.59
GSMUA_Achr10P...	Banana	cytosol	82.73	87.12
AT5G59890.1	Thale cress	cytosol	86.33	86.33
CDX71067	Canola	cytosol	80.58	84.85
GSMUA_Achr6P15320_001	Banana	cytosol	80.58	84.85
Bra006686.1-P	Field mustard	cytosol	80.58	84.85
EER95084	Sorghum	cytosol	84.17	84.17
Os05t0113400-01	Rice	cytosol, extracellular, plastid	83.45	84.06
Bra020277.1-P	Field mustard	cytosol	88.49	82.55
AT5G59880.1	Thale cress	cytosol	82.01	82.01
Bra006687.1-P	Field mustard	cytosol	88.49	80.39
CDX88730	Canola	cytosol	88.49	79.87
EES17589	Sorghum	cytosol	79.14	79.14
HORVU0Hr1G000200.1	Barley	cytosol	79.14	79.14
KRH27939	Soybean	cytosol	77.7	78.83
KRG91521	Soybean	cytosol	76.98	78.1
KRH35309	Soybean	cytosol	76.98	78.1
KRH77527	Soybean	cytosol	76.98	78.1
CDY09242	Canola	cytosol	85.61	77.78
AT3G46010.2	Thale cress	cytosol	83.45	77.33
Bra020276.1-P	Field mustard	cytosol	84.89	77.12
Zm00001d035629_P001	Maize	cytosol	76.98	76.98
KRH41156	Soybean	cytosol	71.94	76.92
Zm00001d035625_P001	Maize	cytosol	71.94	76.34
AT3G46000.2	Thale cress	cytosol	84.89	75.64
CDX71068	Canola	cytosol	88.49	75.0
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	87.77	73.49
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	86.33	72.29
Bra038266.1-P	Field mustard	cytosol	86.33	71.86
CDX99133	Canola	cytosol, plastid	86.33	71.86
CDX86048	Canola	cytosol, plastid	85.61	71.26
KRH51874	Soybean	cytosol	56.83	67.52
VIT_08s0040g03360.t01	Wine grape	plastid	91.37	67.2
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	89.21	67.03
VIT_11s0103g00260.t01	Wine grape	cytosol	55.4	65.25
VIT_10s0092g00330.t01	Wine grape	cytosol	41.73	63.74
KRH59855	Soybean	endoplasmic reticulum, extracellular	76.98	63.31
KRH29274	Soybean	cytosol	58.99	62.12
KRH67374	Soybean	cytosol	63.31	60.27
AT3G45990.1	Thale cress	cytosol	57.55	60.15
KRG92420	Soybean	cytosol	64.03	60.14
CDX88731	Canola	cytosol, plastid	85.61	59.8
KRG95660	Soybean	cytosol	62.59	59.59
KRH51402	Soybean	cytosol	61.15	59.44
KRH24296	Soybean	cytosol, plastid	61.15	59.44
KRH34385	Soybean	cytosol	62.59	58.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum	86.33	55.3
CDX80216	Canola	cytosol	88.49	48.81
GSMUA_Achr2P16220_001	Banana	cytosol	87.77	43.88

Protein Annotations

EntrezGene:100499953	MapMan:20.2.2.8	Gene3D:3.40.20.10	EMBL:ACUP02008197	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	EMBL:BT090245	UniProt:C6SYJ7	EnsemblPlantsGene:GLYMA_13G131700	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108
InterPro:IPR029006	EnsemblPlants:KRH19714	ProteinID:KRH19714	ProteinID:KRH19714.1	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0001B15874	:

Description

hypothetical protein

Coordinates

chr13:-:24426010..24427939

Molecular Weight (calculated)

15996.0 Da

IEP (calculated)

5.982

GRAVY (calculated)

-0.465

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLKFLE LKAKRTYRFI VFKIEEKQKQ VIVEKLGEPA NGYDDFAASL PADECRYAVY DFDFVTEENC QKSRIFFIAW SPDTSRVRSK
101: MIYASSKDRF KRELDGIQIE LQATDPTEMG LDVFKSRAN

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.