Factsheet for Bra006687.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002522.1-P	Field mustard	cytosol	86.27	94.96
Bra020277.1-P	Field mustard	cytosol	90.2	92.62
CDX71068	Canola	cytosol	98.69	92.07
CDX88730	Canola	cytosol	91.5	90.91
KRH19714	Soybean	nucleus	80.39	88.49
Bra006686.1-P	Field mustard	cytosol	75.82	87.88
AT5G59880.1	Thale cress	cytosol	77.78	85.61
GSMUA_Achr10P...	Banana	cytosol	72.55	84.09
Os05t0113400-01	Rice	cytosol, extracellular, plastid	75.82	84.06
KRH11708	Soybean	mitochondrion	75.82	83.45
KRH36708	Soybean	mitochondrion	75.16	82.73
KRH32309	Soybean	cytosol, nucleus	77.78	82.64
Bra020276.1-P	Field mustard	cytosol	82.35	82.35
EER95084	Sorghum	cytosol	73.2	80.58
GSMUA_Achr6P15320_001	Banana	cytosol	69.28	80.3
EES17589	Sorghum	cytosol	72.55	79.86
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	71.24	79.56
PGSC0003DMT400008913	Potato	cytosol	71.24	79.56
HORVU0Hr1G000200.1	Barley	cytosol	71.9	79.14
Bra010456.1-P	Field mustard	cytosol	71.24	78.42
Bra028304.1-P	Field mustard	cytosol	66.01	77.69
Bra019151.1-P	Field mustard	cytosol	65.36	77.52
Zm00001d035629_P001	Maize	cytosol	69.93	76.98
Bra029119.1-P	Field mustard	cytosol	65.36	76.92
Zm00001d035625_P001	Maize	cytosol	64.71	75.57
Bra038266.1-P	Field mustard	cytosol	79.74	73.05
Bra033236.1-P	Field mustard	cytosol	66.01	72.14
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.12	71.08
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	77.12	71.08
Bra013901.1-P	Field mustard	cytosol	69.93	70.39
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	77.12	63.78
VIT_08s0040g03360.t01	Wine grape	plastid	78.43	63.49
Bra018268.1-P	Field mustard	mitochondrion	58.82	61.64
VIT_11s0103g00260.t01	Wine grape	cytosol	47.06	61.02
VIT_10s0092g00330.t01	Wine grape	cytosol	35.95	60.44
Bra013058.1-P	Field mustard	cytosol	50.33	53.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum	75.82	53.46
Bra017683.1-P	Field mustard	cytosol	46.41	52.59
Bra011575.1-P	Field mustard	cytosol	48.37	52.11
GSMUA_Achr2P16220_001	Banana	cytosol	76.47	42.09
Bra037352.1-P	Field mustard	cytosol	64.71	35.23

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	EnsemblPlantsGene:Bra006687
EnsemblPlants:Bra006687.1	EnsemblPlants:Bra006687.1-P	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M4CR46
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF27	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI0002540219	:	:	:	:	:

Description

AT3G46010 (E=1e-067) ADF1, atadf, ATADF1 | ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding

Coordinates

chrA03:-:4631707..4632336

Molecular Weight (calculated)

17544.0 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.393

Length

153 amino acids

Sequence
(BLAST)

001: MVQLQEMISF RAGVKANAAS GMAVHDDCKL KFLELKAKRT YRFIVYKIEE QQKQVVVEKL GEPGQSHDDF AASLPADECR YAIFDFDFVT AENCQKSKIF
101: FIAWSPDTAR VRSKMIYASS KDRFKRELDG IQVELQATDP TEMDLDIFKS RAN

Best Arabidopsis Sequence Match ( AT3G46010.2 )
(BLAST)

001: MVSSIFHLLS RSANAASGMA VHDDCKLRFL ELKAKRTHRF IVYKIEEKQK QVVVEKVGQP IQTYEEFAAC LPADECRYAI YDFDFVTAEN CQKSKIFFIA
101: WCPDIAKVRS KMIYASSKDR FKRELDGIQV ELQATDPTEM DLDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.