Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59880.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G59880.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0113400-01 | Rice | cytosol, extracellular, plastid | 92.09 | 92.75 |
| EES17589 | Sorghum | cytosol | 91.37 | 91.37 |
| Zm00001d035629_P001 | Maize | cytosol | 87.77 | 87.77 |
| Zm00001d035625_P001 | Maize | cytosol | 82.01 | 87.02 |
| Solyc09g010440.2.1 | Tomato | plastid | 81.3 | 81.3 |
| PGSC0003DMT400023061 | Potato | cytosol | 81.3 | 81.3 |
| GSMUA_Achr6P15320_001 | Banana | cytosol | 76.26 | 80.3 |
| AT5G59890.1 | Thale cress | cytosol | 79.86 | 79.86 |
| Solyc10g084660.1.1 | Tomato | cytosol, extracellular | 79.86 | 79.86 |
| CDX71067 | Canola | cytosol | 75.54 | 79.55 |
| Bra006686.1-P | Field mustard | cytosol | 75.54 | 79.55 |
| VIT_13s0019g00550.t01 | Wine grape | cytosol | 79.14 | 79.14 |
| Bra002522.1-P | Field mustard | cytosol | 79.14 | 79.14 |
| KRH19714 | Soybean | nucleus | 79.14 | 79.14 |
| CDY31586 | Canola | cytosol | 74.82 | 78.79 |
| PGSC0003DMT400028567 | Potato | cytosol | 78.42 | 78.42 |
| PGSC0003DMT400071339 | Potato | cytosol | 79.86 | 77.62 |
| Solyc04g011370.2.1 | Tomato | extracellular | 79.14 | 76.92 |
| AT5G59880.1 | Thale cress | cytosol | 76.26 | 76.26 |
| PGSC0003DMT400087280 | Potato | cytosol | 74.1 | 75.74 |
| Bra020277.1-P | Field mustard | cytosol | 80.58 | 75.17 |
| KRH11708 | Soybean | mitochondrion | 74.82 | 74.82 |
| KRH32309 | Soybean | cytosol, nucleus | 76.98 | 74.31 |
| KRH36708 | Soybean | mitochondrion | 74.1 | 74.1 |
| AT3G46010.2 | Thale cress | cytosol | 77.7 | 72.0 |
| Bra020276.1-P | Field mustard | cytosol | 79.14 | 71.9 |
| Bra006687.1-P | Field mustard | cytosol | 79.14 | 71.9 |
| CDX88730 | Canola | cytosol | 79.14 | 71.43 |
| CDY09242 | Canola | cytosol | 78.42 | 71.24 |
| Solyc06g005360.2.1 | Tomato | cytosol, extracellular, nucleus | 69.78 | 70.8 |
| PGSC0003DMT400008913 | Potato | cytosol | 69.78 | 70.8 |
| AT3G46000.2 | Thale cress | cytosol | 75.54 | 67.31 |
| VIT_06s0004g04280.t01 | Wine grape | cytosol | 81.3 | 67.26 |
| CDX71068 | Canola | cytosol | 79.14 | 67.07 |
| Bra038266.1-P | Field mustard | cytosol | 79.14 | 65.87 |
| CDX99133 | Canola | cytosol, plastid | 79.14 | 65.87 |
| HORVU2Hr1G053570.1 | Barley | cytosol | 65.47 | 65.47 |
| CDX86048 | Canola | cytosol, plastid | 78.42 | 65.27 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 84.17 | 63.24 |
| HORVU2Hr1G053580.1 | Barley | mitochondrion | 64.75 | 58.82 |
| VIT_08s0040g03360.t01 | Wine grape | plastid | 79.86 | 58.73 |
| AT3G45990.1 | Thale cress | cytosol | 55.4 | 57.89 |
| CDX88731 | Canola | cytosol, plastid | 80.58 | 56.28 |
| VIT_11s0103g00260.t01 | Wine grape | cytosol | 46.76 | 55.08 |
| HORVU4Hr1G063830.6 | Barley | cytosol | 56.12 | 54.55 |
| VIT_10s0092g00330.t01 | Wine grape | cytosol | 35.25 | 53.85 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 82.73 | 53.0 |
| HORVU5Hr1G113010.1 | Barley | cytosol, plastid | 50.36 | 47.62 |
| HORVU1Hr1G048450.4 | Barley | cytosol | 50.36 | 44.3 |
| CDX80216 | Canola | cytosol | 79.86 | 44.05 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 84.89 | 42.45 |
| HORVU5Hr1G113020.2 | Barley | cytosol | 30.94 | 41.35 |
| HORVU5Hr1G045750.1 | Barley | cytosol | 52.52 | 41.01 |
| HORVU5Hr1G100770.1 | Barley | cytosol, plastid | 57.55 | 40.0 |
| HORVU5Hr1G045770.1 | Barley | plastid | 50.36 | 38.67 |
| HORVU2Hr1G097130.3 | Barley | cytosol | 48.92 | 35.98 |
| HORVU5Hr1G113060.1 | Barley | mitochondrion | 50.36 | 31.25 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 |
| EnsemblPlantsGene:HORVU0Hr1G000200 | EnsemblPlants:HORVU0Hr1G000200.1 | InterPro:IPR002108 | InterPro:IPR029006 | UniProt:M0VXJ2 | PFAM:PF00241 |
| PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF30 | SMART:SM00102 | SUPFAM:SSF55753 | UniParc:UPI0001BA9187 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:549901..552199
Molecular Weight (calculated)
15932.0 Da
IEP (calculated)
5.987
GRAVY (calculated)
-0.411
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MANAASGMAV DDECKLKFLE LKAKRTHRFI IYKIDDKKKM VVVEKVGEPA LNYEDFAASL PTNECRYAIF DYDFVTEENC QKSKIFFVAW SPDTARVRSK
101: MIYASSKERF KRELDGIQVE LQATDPTEVG FDVIQGRAN
101: MIYASSKERF KRELDGIQVE LQATDPTEVG FDVIQGRAN
001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN
Arabidopsis Description
ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.