Factsheet for VIT_13s0019g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	82.73	87.12
Os05t0113400-01	Rice	cytosol, extracellular, plastid	83.45	84.06
GSMUA_Achr6P15320_001	Banana	cytosol	78.42	82.58
EER95084	Sorghum	cytosol	82.01	82.01
HORVU0Hr1G000200.1	Barley	cytosol	79.14	79.14
EES17589	Sorghum	cytosol	78.42	78.42
VIT_06s0004g04280.t01	Wine grape	cytosol	93.53	77.38
Zm00001d035629_P001	Maize	cytosol	76.98	76.98
VIT_16s0050g00220.t01	Wine grape	cytosol	72.66	76.52
Zm00001d035625_P001	Maize	cytosol	71.94	76.34
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	86.33	72.29
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	85.61	71.69
VIT_08s0040g03360.t01	Wine grape	plastid	94.24	69.31
VIT_10s0092g00330.t01	Wine grape	cytosol	43.88	67.03
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	88.49	66.49
VIT_11s0103g00260.t01	Wine grape	cytosol	56.12	66.1
VIT_05s0049g00980.t01	Wine grape	cytosol	63.31	61.54
VIT_07s0005g03310.t01	Wine grape	cytosol	63.31	61.54
VIT_03s0038g02220.t01	Wine grape	cytosol	56.83	59.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum	84.17	53.92
GSMUA_Achr2P16220_001	Banana	cytosol	87.05	43.53
VIT_15s0046g03040.t01	Wine grape	cytosol	77.7	42.19

Protein Annotations

EntrezGene:100263260	wikigene:100263260	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	ProteinID:CCB56375	ProteinID:CCB56375.1	UniProt:F6HN87	EMBL:FN595998	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	EntrezGene:LOC100263260	wikigene:LOC100263260	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	TIGR:TC52662	TIGR:TC57670
UniParc:UPI000198476A	ArrayExpress:VIT_13s0019g00550	EnsemblPlantsGene:VIT_13s0019g00550	EnsemblPlants:VIT_13s0019g00550.t01	RefSeq:XP_002284029	RefSeq:XP_002284029.1
RefSeq:XP_002284040	RefSeq:XP_002284040.1	RefSeq:XP_003633478	RefSeq:XP_003633478.1	RefSeq:XP_010658601.1	:

Description

No Description!

Coordinates

chr13:+:2556369..2559171

Molecular Weight (calculated)

15960.9 Da

IEP (calculated)

5.335

GRAVY (calculated)

-0.438

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLKFLE LKAKRTYRSI VFQIEEKQKQ VIVEKVGEPT QSYEDFAASL PADECRYAVY DFDFVTEENC QKSRIFFIAW SPDTSRVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEIG LDVIRSRAC

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.