Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- cytosol 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P15320_001 | Banana | cytosol | 65.41 | 91.67 |
| GSMUA_Achr10P... | Banana | cytosol | 64.86 | 90.91 |
| Os05t0113400-01 | Rice | cytosol, extracellular, plastid | 67.03 | 89.86 |
| KRH19714 | Soybean | nucleus | 67.03 | 89.21 |
| VIT_13s0019g00550.t01 | Wine grape | cytosol | 66.49 | 88.49 |
| Solyc09g010440.2.1 | Tomato | plastid | 64.32 | 85.61 |
| Solyc10g084660.1.1 | Tomato | cytosol, extracellular | 63.78 | 84.89 |
| EES17589 | Sorghum | cytosol | 63.24 | 84.17 |
| AT5G59890.1 | Thale cress | cytosol | 63.24 | 84.17 |
| HORVU0Hr1G000200.1 | Barley | cytosol | 63.24 | 84.17 |
| PGSC0003DMT400023061 | Potato | cytosol | 62.7 | 83.45 |
| PGSC0003DMT400028567 | Potato | cytosol | 62.7 | 83.45 |
| KRH32309 | Soybean | cytosol, nucleus | 64.32 | 82.64 |
| CDX71067 | Canola | cytosol | 58.92 | 82.58 |
| Bra006686.1-P | Field mustard | cytosol | 58.92 | 82.58 |
| Solyc04g011370.2.1 | Tomato | extracellular | 63.78 | 82.52 |
| KRH11708 | Soybean | mitochondrion | 61.62 | 82.01 |
| Zm00001d035629_P001 | Maize | cytosol | 61.62 | 82.01 |
| GSMUA_Achr8P11370_001 | Banana | cytosol | 49.19 | 81.98 |
| PGSC0003DMT400071339 | Potato | cytosol | 63.24 | 81.82 |
| Zm00001d035625_P001 | Maize | cytosol | 57.84 | 81.68 |
| Bra002522.1-P | Field mustard | cytosol | 61.08 | 81.3 |
| KRH36708 | Soybean | mitochondrion | 61.08 | 81.3 |
| CDY31586 | Canola | cytosol | 57.84 | 81.06 |
| PGSC0003DMT400087280 | Potato | cytosol | 58.92 | 80.15 |
| GSMUA_Achr11P... | Banana | cytosol | 56.22 | 78.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.22 | 78.79 |
| Bra020277.1-P | Field mustard | cytosol | 63.24 | 78.52 |
| PGSC0003DMT400008913 | Potato | cytosol | 57.84 | 78.1 |
| Solyc06g005360.2.1 | Tomato | cytosol, extracellular, nucleus | 57.84 | 78.1 |
| GSMUA_Achr1P00290_001 | Banana | cytosol | 55.14 | 77.27 |
| GSMUA_Achr11P... | Banana | cytosol | 55.14 | 77.27 |
| Bra006687.1-P | Field mustard | cytosol | 63.78 | 77.12 |
| GSMUA_Achr9P04050_001 | Banana | endoplasmic reticulum, extracellular | 69.19 | 77.11 |
| AT3G46010.2 | Thale cress | cytosol | 62.16 | 76.67 |
| CDX88730 | Canola | cytosol | 63.78 | 76.62 |
| CDY09242 | Canola | cytosol | 63.24 | 76.47 |
| AT5G59880.1 | Thale cress | cytosol | 57.3 | 76.26 |
| Bra020276.1-P | Field mustard | cytosol | 62.7 | 75.82 |
| VIT_06s0004g04280.t01 | Wine grape | cytosol | 68.65 | 75.6 |
| GSMUA_Achr4P29400_001 | Banana | cytosol | 40.0 | 75.51 |
| GSMUA_Achr6P33310_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 67.57 | 75.3 |
| AT3G46000.2 | Thale cress | cytosol | 61.08 | 72.44 |
| GSMUA_Achr5P24750_001 | Banana | cytosol | 43.24 | 72.07 |
| CDX71068 | Canola | cytosol | 63.78 | 71.95 |
| Bra038266.1-P | Field mustard | cytosol | 63.24 | 70.06 |
| CDX99133 | Canola | cytosol, plastid | 63.24 | 70.06 |
| VIT_08s0040g03360.t01 | Wine grape | plastid | 71.35 | 69.84 |
| GSMUA_Achr7P00900_001 | Banana | cytosol | 49.73 | 69.7 |
| CDX86048 | Canola | cytosol, plastid | 62.7 | 69.46 |
| GSMUA_Achr2P13120_001 | Banana | cytosol | 52.97 | 67.59 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 77.3 | 65.9 |
| GSMUA_Achr7P16650_001 | Banana | cytosol | 34.05 | 65.62 |
| GSMUA_Achr6P15330_001 | Banana | cytosol, plastid | 31.89 | 65.56 |
| GSMUA_Achr2P17320_001 | Banana | cytosol | 50.81 | 64.83 |
| VIT_11s0103g00260.t01 | Wine grape | cytosol | 40.0 | 62.71 |
| CDX88731 | Canola | cytosol, plastid | 65.41 | 60.8 |
| GSMUA_Achr5P12270_001 | Banana | plastid, vacuole | 65.41 | 60.2 |
| AT3G45990.1 | Thale cress | cytosol | 43.24 | 60.15 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 45.41 | 58.74 |
| GSMUA_Achr5P18890_001 | Banana | cytosol, plastid | 44.32 | 57.34 |
| VIT_10s0092g00330.t01 | Wine grape | cytosol | 28.11 | 57.14 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 77.84 | 51.8 |
| GSMUA_Achr1P09160_001 | Banana | cytosol | 53.51 | 50.77 |
| GSMUA_Achr2P18590_001 | Banana | cytosol | 60.0 | 48.9 |
| GSMUA_Achr11P... | Banana | cytosol | 44.32 | 48.52 |
| CDX80216 | Canola | cytosol | 64.86 | 47.62 |
| GSMUA_Achr2P11510_001 | Banana | cytosol | 58.38 | 47.37 |
| GSMUA_AchrUn_... | Banana | extracellular | 17.84 | 37.93 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 |
| EnsemblPlantsGene:GSMUA_Achr10G03670_001 | EnsemblPlants:GSMUA_Achr10P03670_001 | EnsemblPlants:GSMUA_Achr10T03670_001 | InterPro:IPR002108 | InterPro:IPR029006 | UniProt:M0RF44 |
| PFAM:PF00241 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF30 | SMART:SM00102 | SUPFAM:SSF55753 |
| SignalP:SignalP-noTM | UniParc:UPI000295B6F6 | SEG:seg | : | : | : |
Description
Actin-depolymerizing factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G03670_001]
Coordinates
chr10:-:11927284..11931101
Molecular Weight (calculated)
20958.3 Da
IEP (calculated)
7.745
GRAVY (calculated)
-0.111
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MLWVILSLPT LHLLRCSLLL SSSVGCFLSQ PCYSPAPVSF VNRSSDMANA ASGMAVNDDC KLKFLELKAK RTYRFIVFKI DEKLKQVIVE KVGEPTLGYD
101: DFAASLPNNE CRYAIYDFDF VTEENCQKSK IFFIAWSPDT SRVRSKMLYA SSKDRFKREL DGIQVELQAT DPTEMGLDVI RGRAN
101: DFAASLPNNE CRYAIYDFDF VTEENCQKSK IFFIAWSPDT SRVRSKMLYA SSKDRFKREL DGIQVELQAT DPTEMGLDVI RGRAN
001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN
Arabidopsis Description
ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.