Factsheet for Bra020277.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002522.1-P	Field mustard	cytosol	89.93	96.4
Bra006687.1-P	Field mustard	cytosol	92.62	90.2
KRH19714	Soybean	nucleus	82.55	88.49
Bra006686.1-P	Field mustard	cytosol	77.85	87.88
AT5G59880.1	Thale cress	cytosol	81.21	87.05
GSMUA_Achr10P...	Banana	cytosol	74.5	84.09
Os05t0113400-01	Rice	cytosol, extracellular, plastid	77.85	84.06
KRH11708	Soybean	mitochondrion	77.85	83.45
KRH36708	Soybean	mitochondrion	77.18	82.73
KRH32309	Soybean	cytosol, nucleus	79.19	81.94
Bra020276.1-P	Field mustard	cytosol	83.22	81.05
EER95084	Sorghum	cytosol	75.17	80.58
HORVU0Hr1G000200.1	Barley	cytosol	75.17	80.58
GSMUA_Achr6P15320_001	Banana	cytosol	71.14	80.3
EES17589	Sorghum	cytosol	74.5	79.86
PGSC0003DMT400008913	Potato	cytosol	73.15	79.56
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	73.15	79.56
Zm00001d035629_P001	Maize	cytosol	71.81	76.98
Bra010456.1-P	Field mustard	cytosol	71.14	76.26
Bra028304.1-P	Field mustard	cytosol	66.44	76.15
Bra019151.1-P	Field mustard	cytosol	65.77	75.97
Zm00001d035625_P001	Maize	cytosol	66.44	75.57
Bra029119.1-P	Field mustard	cytosol	65.77	75.38
Bra038266.1-P	Field mustard	cytosol	81.88	73.05
Bra033236.1-P	Field mustard	cytosol	66.44	70.71
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	78.52	70.48
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.85	69.88
Bra013901.1-P	Field mustard	cytosol	70.47	69.08
VIT_08s0040g03360.t01	Wine grape	plastid	80.54	63.49
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	78.52	63.24
Bra018268.1-P	Field mustard	mitochondrion	61.07	62.33
VIT_11s0103g00260.t01	Wine grape	cytosol	47.65	60.17
VIT_10s0092g00330.t01	Wine grape	cytosol	36.24	59.34
GSMUA_Achr10P...	Banana	endoplasmic reticulum	77.85	53.46
Bra013058.1-P	Field mustard	cytosol	50.34	52.45
Bra017683.1-P	Field mustard	cytosol	46.98	51.85
Bra011575.1-P	Field mustard	cytosol	48.99	51.41
GSMUA_Achr2P16220_001	Banana	cytosol	78.52	42.09
Bra037352.1-P	Field mustard	cytosol	65.1	34.52

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	EnsemblPlantsGene:Bra020277
EnsemblPlants:Bra020277.1	EnsemblPlants:Bra020277.1-P	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	GO:GO:0042742	InterPro:IPR002108	InterPro:IPR029006
UniProt:M4DUT4	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF27	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI00025435F3	:	:	:	:

Description

AT3G46010 (E=4e-068) ADF1, atadf, ATADF1 | ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding

Coordinates

chrA02:-:5993537..5994230

Molecular Weight (calculated)

16976.0 Da

IEP (calculated)

5.064

GRAVY (calculated)

-0.510

Length

149 amino acids

Sequence
(BLAST)

001: MRVASDEDSS TANAASGMAV HDDCKLKFLE LKAKRTYRFI VYKIEEQQKQ VVVEKLGEPG QSHDDFAASL PADECRYAIF DFDFVTAENC QKSKIFFVAW
101: SPDTARVRSK MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN

Best Arabidopsis Sequence Match ( AT3G46010.2 )
(BLAST)

001: MVSSIFHLLS RSANAASGMA VHDDCKLRFL ELKAKRTHRF IVYKIEEKQK QVVVEKVGQP IQTYEEFAAC LPADECRYAI YDFDFVTAEN CQKSKIFFIA
101: WCPDIAKVRS KMIYASSKDR FKRELDGIQV ELQATDPTEM DLDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.