Factsheet for GSMUA_Achr10P02570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G59880.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G59880.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G59880.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P15320_001	Banana	cytosol	88.64	88.64
PGSC0003DMT400087280	Potato	cytosol	86.36	83.82
Bra006686.1-P	Field mustard	cytosol	83.33	83.33
CDX71067	Canola	cytosol	83.33	83.33
VIT_13s0019g00550.t01	Wine grape	cytosol	87.12	82.73
KRH19714	Soybean	nucleus	87.12	82.73
GSMUA_Achr8P11370_001	Banana	cytosol	68.94	81.98
CDY31586	Canola	cytosol	81.82	81.82
Solyc04g011370.2.1	Tomato	extracellular	87.88	81.12
EER95084	Sorghum	cytosol	84.85	80.58
Solyc10g084660.1.1	Tomato	cytosol, extracellular	84.85	80.58
AT5G59890.1	Thale cress	cytosol	84.85	80.58
PGSC0003DMT400071339	Potato	cytosol	87.12	80.42
PGSC0003DMT400028567	Potato	cytosol	83.33	79.14
Solyc09g010440.2.1	Tomato	plastid	81.06	76.98
KRH11708	Soybean	mitochondrion	81.06	76.98
Bra002522.1-P	Field mustard	cytosol	81.06	76.98
PGSC0003DMT400023061	Potato	cytosol	81.06	76.98
GSMUA_Achr11P...	Banana	cytosol	76.52	76.52
KRH32309	Soybean	cytosol, nucleus	83.33	76.39
KRH36708	Soybean	mitochondrion	80.3	76.26
GSMUA_Achr11P...	Banana	cytosol	75.76	75.76
GSMUA_AchrUn_...	Banana	cytosol	75.0	75.0
Bra020277.1-P	Field mustard	cytosol	84.09	74.5
AT5G59880.1	Thale cress	cytosol	78.03	74.1
GSMUA_Achr4P29400_001	Banana	cytosol	54.55	73.47
AT3G46010.2	Thale cress	cytosol	83.33	73.33
PGSC0003DMT400008913	Potato	cytosol	75.76	72.99
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	75.76	72.99
Bra006687.1-P	Field mustard	cytosol	84.09	72.55
CDX88730	Canola	cytosol	84.09	72.08
GSMUA_Achr1P00290_001	Banana	cytosol	71.97	71.97
CDY09242	Canola	cytosol	83.33	71.9
Bra020276.1-P	Field mustard	cytosol	82.58	71.24
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	89.39	71.08
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	89.39	71.08
GSMUA_Achr5P24750_001	Banana	cytosol	58.33	69.37
VIT_06s0004g04280.t01	Wine grape	cytosol	87.88	69.05
GSMUA_Achr7P00900_001	Banana	cytosol	68.94	68.94
AT3G46000.2	Thale cress	cytosol	81.06	68.59
CDX71068	Canola	cytosol	84.09	67.68
Bra038266.1-P	Field mustard	cytosol	82.58	65.27
CDX99133	Canola	cytosol, plastid	82.58	65.27
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	90.91	64.86
CDX86048	Canola	cytosol, plastid	81.82	64.67
GSMUA_Achr2P17320_001	Banana	cytosol	67.42	61.38
GSMUA_Achr2P13120_001	Banana	cytosol	67.42	61.38
GSMUA_Achr6P15330_001	Banana	cytosol, plastid	41.67	61.11
AT3G45990.1	Thale cress	cytosol	61.36	60.9
VIT_08s0040g03360.t01	Wine grape	plastid	86.36	60.32
GSMUA_Achr7P16650_001	Banana	cytosol	43.18	59.38
VIT_10s0092g00330.t01	Wine grape	cytosol	40.91	59.34
VIT_11s0103g00260.t01	Wine grape	cytosol	50.76	56.78
CDX88731	Canola	cytosol, plastid	83.33	55.28
GSMUA_Achr10P...	Banana	endoplasmic reticulum	90.15	54.84
GSMUA_Achr5P18890_001	Banana	cytosol, plastid	56.82	52.45
GSMUA_Achr11P...	Banana	cytosol, plastid	56.82	52.45
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	76.52	50.25
GSMUA_Achr11P...	Banana	cytosol	57.58	44.97
GSMUA_Achr1P09160_001	Banana	cytosol	65.91	44.62
GSMUA_Achr2P18590_001	Banana	cytosol	75.76	44.05
GSMUA_Achr2P11510_001	Banana	cytosol	74.24	42.98
CDX80216	Canola	cytosol	81.82	42.86
GSMUA_Achr2P16220_001	Banana	cytosol	87.88	41.73
GSMUA_AchrUn_...	Banana	extracellular	24.24	36.78

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
EnsemblPlantsGene:GSMUA_Achr10G02570_001	EnsemblPlants:GSMUA_Achr10P02570_001	EnsemblPlants:GSMUA_Achr10T02570_001	InterPro:IPR002108	InterPro:IPR029006	UniProt:M0RET4
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI000295D7B8	:	:	:	:	:

Description

Actin-depolymerizing factor 4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G02570_001]

Coordinates

chr10:-:7414267..7415662

Molecular Weight (calculated)

15402.5 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.410

Length

132 amino acids

Sequence
(BLAST)

001: MAVNDDCKLK FLELKAKRTY RFIIFKIDEK QKQVIVDKLG EPTLAYEDFA ASLPADECRY AIYDFDFVTE ENCQKSKIFF IAWSPDIARV RNKMLYASSK
101: DRFKRELDGI QVELQATDPT EMGLDVIRSR AN

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.