Factsheet for PGSC0003DMT400023061

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010440.2.1	Tomato	plastid	97.84	97.84
PGSC0003DMT400028567	Potato	cytosol	88.49	88.49
PGSC0003DMT400071339	Potato	cytosol	85.61	83.22
PGSC0003DMT400087280	Potato	cytosol	79.86	81.62
HORVU0Hr1G000200.1	Barley	cytosol	81.3	81.3
GSMUA_Achr10P...	Banana	cytosol	76.98	81.06
PGSC0003DMT400008913	Potato	cytosol	79.86	81.02
EES17589	Sorghum	cytosol	80.58	80.58
EER95084	Sorghum	cytosol	80.58	80.58
GSMUA_Achr6P15320_001	Banana	cytosol	76.26	80.3
Os05t0113400-01	Rice	cytosol, extracellular, plastid	79.14	79.71
Zm00001d035629_P001	Maize	cytosol	77.7	77.7
Zm00001d035625_P001	Maize	cytosol	71.94	76.34
PGSC0003DMT400076911	Potato	cytosol	74.82	75.36
PGSC0003DMT400000464	Potato	cytosol	68.35	69.34
PGSC0003DMT400037205	Potato	cytosol	68.35	69.34
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	82.01	68.67
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.01	68.67
PGSC0003DMT400026582	Potato	mitochondrion	68.35	68.35
VIT_08s0040g03360.t01	Wine grape	plastid	89.93	66.14
VIT_11s0103g00260.t01	Wine grape	cytosol	56.12	66.1
VIT_10s0092g00330.t01	Wine grape	cytosol	42.45	64.84
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	83.45	62.7
PGSC0003DMT400044218	Potato	cytosol	60.43	57.93
PGSC0003DMT400015865	Potato	cytosol	58.99	57.34
GSMUA_Achr10P...	Banana	endoplasmic reticulum	82.73	53.0
PGSC0003DMT400026656	Potato	mitochondrion	63.31	48.62
GSMUA_Achr2P16220_001	Banana	cytosol	84.17	42.09

Protein Annotations

EntrezGene:102585767	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1AHP7	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400008928
PGSC:PGSC0003DMG400008928	EnsemblPlants:PGSC0003DMT400023061	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI000296906F	RefSeq:XP_006341057.1	SEG:seg	:	:

Description

Actin-depolymerizing factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008928]

Coordinates

chr9:-:2095653..2099120

Molecular Weight (calculated)

16009.1 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.447

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VFKIEEKQKQ VVVEKVGEPA QSYEDFTACL PDNECRYAVY DFDFVTAENC QKSRIFFIAW SPDTARVRSK
101: MIYASTKERF KREVDGIQVE LQATDPTEMG LDVIKSRAN

Best Arabidopsis Sequence Match ( AT3G46010.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKVGQPI QTYEEFAACL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDIAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.