Factsheet for PGSC0003DMT400015865

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111380.2.1	Tomato	cytosol, plastid	98.6	98.6
KRH51402	Soybean	cytosol	87.41	87.41
KRH24296	Soybean	cytosol, plastid	87.41	87.41
KRH29274	Soybean	cytosol	80.42	87.12
VIT_03s0038g02220.t01	Wine grape	cytosol	78.32	84.85
Bra013058.1-P	Field mustard	cytosol	83.22	83.22
AT2G16700.1	Thale cress	cytosol	82.52	82.52
CDX89737	Canola	cytosol	82.52	82.52
CDY02247	Canola	cytosol	82.52	82.52
Zm00001d028392_P001	Maize	cytosol	76.92	76.92
GSMUA_Achr5P18890_001	Banana	cytosol, plastid	76.92	76.92
Os03t0243100-01	Rice	cytosol	76.22	76.22
AT4G34970.1	Thale cress	cytosol	74.83	75.89
HORVU4Hr1G063830.6	Barley	cytosol	75.52	75.52
CDX75477	Canola	cytosol	63.64	75.21
GSMUA_Achr11P...	Banana	cytosol, plastid	74.83	74.83
Bra017683.1-P	Field mustard	cytosol	69.93	74.07
CDY40654	Canola	cytosol	63.64	73.98
TraesCS4D01G228100.1	Wheat	cytosol	73.43	73.43
TraesCS4B01G227300.1	Wheat	cytosol	72.73	72.73
TraesCS4A01G071400.1	Wheat	cytosol	72.73	72.73
Bra011575.1-P	Field mustard	cytosol	71.33	71.83
CDX69101	Canola	cytosol	71.33	71.83
CDX72508	Canola	cytosol	68.53	71.53
GSMUA_Achr11P...	Banana	cytosol	76.22	64.5
Zm00001d047942_P001	Maize	mitochondrion	74.83	62.21
PGSC0003DMT400028567	Potato	cytosol	58.04	59.71
PGSC0003DMT400023061	Potato	cytosol	57.34	58.99
PGSC0003DMT400044218	Potato	cytosol	58.74	57.93
PGSC0003DMT400037205	Potato	cytosol	55.24	57.66
PGSC0003DMT400076911	Potato	cytosol	55.24	57.25
PGSC0003DMT400000464	Potato	cytosol	53.85	56.2
PGSC0003DMT400071339	Potato	cytosol	55.94	55.94
PGSC0003DMT400008913	Potato	cytosol	53.15	55.47
PGSC0003DMT400087280	Potato	cytosol	52.45	55.15
OQU92928	Sorghum	cytosol, plastid	76.22	53.43
PGSC0003DMT400026582	Potato	mitochondrion	50.35	51.8
PGSC0003DMT400026656	Potato	mitochondrion	57.34	45.3

Protein Annotations

EntrezGene:102593190	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1A6Q9	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG401006199
PGSC:PGSC0003DMG401006199	EnsemblPlants:PGSC0003DMT400015865	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF16	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI00029523CC	RefSeq:XP_006359679.1	:	:	:

Description

Actin depolymerizing factor 5 [Source:PGSC_GENE;Acc:PGSC0003DMG401006199]

Coordinates

chr1:+:87351050..87352477

Molecular Weight (calculated)

16430.8 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.377

Length

143 amino acids

Sequence
(BLAST)

001: MAMAFKMATT GMWVTDECKN SYMDMKWKKN HRYIVYKIDE KSRLVTVDKV GGPAENYEDL AAALPKDDCR YAVFDFDFVT VDNCRKSKIF FIAWSPAESR
101: IRAKILYATS KAGLRRVLDG ISYELQATDP TEMGMDVIKD RAK

Best Arabidopsis Sequence Match ( AT2G16700.1 )
(BLAST)

001: MAMAFKMATT GMRVTDECTS SFMDMKWKKV HRYIVFKIEE KSRKVTVDKV GGAGESYHDL EDSLPVDDCR YAVFDFDFVT VDNCRKSKIF FIAWSPEASK
101: IRAKILYATS KDGLRRVLEG IHYELQATDP TEMGFDIIQD RAK

Arabidopsis Description

ADF5ATADF5 [Source:UniProtKB/TrEMBL;Acc:A0A178VPY9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.