Factsheet for VIT_03s0038g02220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29274	Soybean	cytosol	89.39	89.39
KRH24296	Soybean	cytosol, plastid	88.64	81.82
KRH51402	Soybean	cytosol	87.12	80.42
CDX75477	Canola	cytosol	71.97	78.51
Solyc01g111380.2.1	Tomato	cytosol, plastid	84.85	78.32
PGSC0003DMT400015865	Potato	cytosol	84.85	78.32
CDY40654	Canola	cytosol	71.97	77.24
Bra017683.1-P	Field mustard	cytosol	78.03	76.3
Bra013058.1-P	Field mustard	cytosol	81.82	75.52
CDY02247	Canola	cytosol	81.82	75.52
CDX89737	Canola	cytosol	81.06	74.83
CDX72508	Canola	cytosol	77.27	74.45
AT2G16700.1	Thale cress	cytosol	80.3	74.13
AT4G34970.1	Thale cress	cytosol	78.03	73.05
Os03t0243100-01	Rice	cytosol	78.03	72.03
GSMUA_Achr5P18890_001	Banana	cytosol, plastid	77.27	71.33
CDX69101	Canola	cytosol	76.52	71.13
Bra011575.1-P	Field mustard	cytosol	76.52	71.13
Zm00001d028392_P001	Maize	cytosol	76.52	70.63
HORVU4Hr1G063830.6	Barley	cytosol	75.76	69.93
GSMUA_Achr11P...	Banana	cytosol, plastid	75.0	69.23
TraesCS4A01G071400.1	Wheat	cytosol	73.48	67.83
TraesCS4B01G227300.1	Wheat	cytosol	73.48	67.83
TraesCS4D01G228100.1	Wheat	cytosol	72.73	67.13
VIT_07s0005g03310.t01	Wine grape	cytosol	68.18	62.94
VIT_05s0049g00980.t01	Wine grape	cytosol	65.15	60.14
GSMUA_Achr11P...	Banana	cytosol	75.76	59.17
VIT_16s0050g00220.t01	Wine grape	cytosol	59.09	59.09
Zm00001d047942_P001	Maize	mitochondrion	74.24	56.98
VIT_13s0019g00550.t01	Wine grape	cytosol	59.85	56.83
OQU92928	Sorghum	cytosol, plastid	77.27	50.0
VIT_06s0004g04280.t01	Wine grape	cytosol	60.61	47.62
VIT_10s0092g00330.t01	Wine grape	cytosol	29.55	42.86
VIT_08s0040g03360.t01	Wine grape	plastid	59.85	41.8
VIT_11s0103g00260.t01	Wine grape	cytosol	36.36	40.68
VIT_15s0046g03040.t01	Wine grape	cytosol	62.12	32.03

Protein Annotations

EntrezGene:100245314	wikigene:100245314	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	ProteinID:CCB60626	ProteinID:CCB60626.1	UniProt:F6I110	EMBL:FN596508	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	EntrezGene:LOC100245314	wikigene:LOC100245314	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF16	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI000210AA7E	ArrayExpress:VIT_03s0038g02220
EnsemblPlantsGene:VIT_03s0038g02220	EnsemblPlants:VIT_03s0038g02220.t01	unigene:Vvi.19390	RefSeq:XP_002277796	RefSeq:XP_002277796.1	:

Description

No Description!

Coordinates

chr3:+:1528083..1528899

Molecular Weight (calculated)

15192.2 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.437

Length

132 amino acids

Sequence
(BLAST)

001: MWVTDECKNS FMEMKWKKVH RYIVFKIDEG SKLVTVDKVG GPGEGYDELA ASLPTDDCRY AVFDFDFVTN DNCRKSKIFF IAWSPTASRI RAKMLYATSK
101: EGLRRVLDGI HYDMQATDPT EMGMDVIKDR AK

Best Arabidopsis Sequence Match ( AT4G34970.1 )
(BLAST)

001: MALKTATSGM WMTDDCKKSF MEMKWKKVHR YVVYKLEEKS RKVTVDKVGA AGESYDDLAA SLPEDDCRYA VFDFDYVTVD NCRMSKIFFI TWSPEASRIR
101: EKMMYATSKS GLRRVLDGVH YELQATDPTE MGFDKIQDRA K

Arabidopsis Description

ADF9Actin-depolymerizing factor 9 [Source:UniProtKB/Swiss-Prot;Acc:O49606]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.