Factsheet for VIT_06s0004g04280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g00550.t01	Wine grape	cytosol	77.38	93.53
GSMUA_Achr10P...	Banana	cytosol	69.05	87.88
Os05t0113400-01	Rice	cytosol, extracellular, plastid	71.43	86.96
GSMUA_Achr6P15320_001	Banana	cytosol	66.67	84.85
EER95084	Sorghum	cytosol	69.05	83.45
HORVU0Hr1G000200.1	Barley	cytosol	67.26	81.3
EES17589	Sorghum	cytosol	66.67	80.58
VIT_16s0050g00220.t01	Wine grape	cytosol	63.1	80.3
Zm00001d035629_P001	Maize	cytosol	65.48	79.14
Zm00001d035625_P001	Maize	cytosol	61.31	78.63
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.81	74.7
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	72.62	73.49
VIT_08s0040g03360.t01	Wine grape	plastid	79.76	70.9
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	75.6	68.65
VIT_10s0092g00330.t01	Wine grape	cytosol	36.9	68.13
VIT_11s0103g00260.t01	Wine grape	cytosol	47.02	66.95
VIT_05s0049g00980.t01	Wine grape	cytosol	55.36	65.03
VIT_07s0005g03310.t01	Wine grape	cytosol	53.57	62.94
VIT_03s0038g02220.t01	Wine grape	cytosol	47.62	60.61
GSMUA_Achr10P...	Banana	endoplasmic reticulum	75.0	58.06
GSMUA_Achr2P16220_001	Banana	cytosol	75.6	45.68
VIT_15s0046g03040.t01	Wine grape	cytosol	66.67	43.75

Protein Annotations

EntrezGene:100246819	wikigene:100246819	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	ProteinID:CCB43596	ProteinID:CCB43596.1	UniProt:F6GV37	EMBL:FN594951	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	EntrezGene:LOC100246819	wikigene:LOC100246819	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0002109CDC	ArrayExpress:VIT_06s0004g04280
EnsemblPlantsGene:VIT_06s0004g04280	EnsemblPlants:VIT_06s0004g04280.t01	RefSeq:XP_002284292	RefSeq:XP_002284292.1	RefSeq:XP_003632201	RefSeq:XP_003632201.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5236574..5237661

Molecular Weight (calculated)

19215.6 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.562

Length

168 amino acids

Sequence
(BLAST)

001: MLHSANDTTN EETLPINQPL DSSSLNKYFG ANAASGMAVH DDCKLKFLEL KAKRTYRFIV YKIEEKQKQV VVEKVGEPTQ SYEDFTASLP ADECRYAVYD
101: FDFVTEENCQ KSKIFFIAWS PDTSRVRSKM IYASSKDRFK RELDGIQVEL QATDPTEMGL DVIRSRAS

Best Arabidopsis Sequence Match ( AT3G46010.2 )
(BLAST)

001: MVSSIFHLLS RSANAASGMA VHDDCKLRFL ELKAKRTHRF IVYKIEEKQK QVVVEKVGQP IQTYEEFAAC LPADECRYAI YDFDFVTAEN CQKSKIFFIA
101: WCPDIAKVRS KMIYASSKDR FKRELDGIQV ELQATDPTEM DLDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.